View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13735_low_3 (Length: 691)
Name: NF13735_low_3
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13735_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Original strand, 45055889 - 45056480
Alignment:
| Q |
15 |
atcacaataaggcgagggtagaaggccaggtgaattttcaaacgcactgttcaagaaagagttacaaattaagcagcagaataacacacaatctcttata |
114 |
Q |
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| T |
45055889 |
atcacaataaggcgagggtagaaggccaggtgaattttcaaacgcactgttcaagaaagagttacaaattaagcagcagaataacacacaatctcttata |
45055988 |
T |
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| Q |
115 |
agaaaaacacaatgtaaaagaaggctttttgttaccaagccattgctagctgaatctcctttagtaatttcactgttgctctacgatcacaatctttggc |
214 |
Q |
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| T |
45055989 |
agaaaaacacaatgtaaaagaaggttttttgttaccaagccattgctagctgaatctcctttagtaatttcactgttgctctacgatcacaatctttggc |
45056088 |
T |
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| Q |
215 |
taaagagagaagaaagcttcttgtgtatgaaattcttgaccttctgcaacatcaaaattaaaagaatcttgattaatatttgatgatacaggataagtga |
314 |
Q |
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| T |
45056089 |
taaagagagaagaaagcttcttgtgtatgaaattcttgaccttctgcaacatcaaaattaaaagaatcttgattaatatttgatgatacaggataagtga |
45056188 |
T |
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| Q |
315 |
taatgcattacttaactaagtgatcac-aatgcaagttacttaatagagcctaattggtccttatagattgaaccaagttgaaactgatttacaatttaa |
413 |
Q |
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| T |
45056189 |
taatgcattacttaactaagtgatcacaaatgcaagttacttaatagagcctaattggtccttatagattgaaccaagttgaaactgatttacaatttaa |
45056288 |
T |
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| Q |
414 |
ttaggcggaaatatagctaaatagtttataacaaaacaaacgtaggtagtttctctgagcttcaaaagataatttagaattaatatatttgctttacaac |
513 |
Q |
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| T |
45056289 |
ttaggcggaaatatagctaaatagtttataacaaaacaaacgtagttagtttctctgagcttcaaaagataatttagaattaatatatttgctttacaac |
45056388 |
T |
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| Q |
514 |
-----------taataataattataaaatagtaacgaacttaaacagaataccttataacacgccgtacaacaaaacagataatttgtacgg |
594 |
Q |
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| T |
45056389 |
taataatgaattaataataattataaaatagtaacgaacttaaacagaataccttataacacgccgtacaacaaaacagataatttgtacgg |
45056480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 13356923 - 13357006
Alignment:
| Q |
210 |
ttggctaaagagagaagaaagcttcttgtgtatgaaattcttgaccttctgcaacatcaaaattaaaagaatcttgattaatatt |
294 |
Q |
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| T |
13356923 |
ttggccaaagagagaagaaactttatagtgtatgaaattctttaacttctgcaaca-ccaaattaaaagaactttgatttatatt |
13357006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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