View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13735_low_4 (Length: 628)

Name: NF13735_low_4
Description: NF13735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13735_low_4
NF13735_low_4
[»] chr5 (12 HSPs)
chr5 (23-406)||(34458815-34459198)
chr5 (484-610)||(34475952-34476078)
chr5 (485-537)||(430514-430566)
chr5 (479-537)||(2566238-2566296)
chr5 (487-537)||(15292168-15292218)
chr5 (487-537)||(32269940-32269990)
chr5 (480-537)||(23023502-23023559)
chr5 (489-537)||(35310364-35310412)
chr5 (436-467)||(34475919-34475950)
chr5 (481-526)||(15506769-15506814)
chr5 (504-537)||(25663175-25663208)
chr5 (479-536)||(37873782-37873839)
[»] chr8 (10 HSPs)
chr8 (422-537)||(38815143-38815258)
chr8 (485-537)||(3187882-3187934)
chr8 (479-531)||(39434573-39434625)
chr8 (484-537)||(4699782-4699835)
chr8 (484-532)||(500153-500201)
chr8 (505-537)||(8882276-8882308)
chr8 (479-535)||(22589481-22589537)
chr8 (436-527)||(4073397-4073488)
chr8 (500-537)||(24451047-24451084)
chr8 (439-523)||(18804479-18804563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (479-537)||(103012-103070)
[»] chr6 (9 HSPs)
chr6 (479-537)||(3137390-3137448)
chr6 (481-537)||(959489-959545)
chr6 (422-537)||(34168770-34168884)
chr6 (479-533)||(7749387-7749441)
chr6 (479-529)||(17249456-17249506)
chr6 (479-537)||(29338222-29338280)
chr6 (499-537)||(32115644-32115682)
chr6 (480-529)||(34554427-34554476)
chr6 (505-537)||(357859-357891)
[»] chr3 (12 HSPs)
chr3 (439-537)||(26772624-26772722)
chr3 (479-537)||(32546701-32546759)
chr3 (452-537)||(13582389-13582474)
chr3 (479-537)||(39583372-39583430)
chr3 (486-535)||(26276528-26276577)
chr3 (485-537)||(53785621-53785673)
chr3 (479-537)||(26856905-26856963)
chr3 (499-537)||(38671023-38671061)
chr3 (420-537)||(44198614-44198731)
chr3 (486-535)||(49017880-49017929)
chr3 (505-533)||(4763939-4763967)
chr3 (478-526)||(5338551-5338599)
[»] chr7 (11 HSPs)
chr7 (486-537)||(48539094-48539145)
chr7 (479-537)||(45613985-45614043)
chr7 (452-532)||(982828-982908)
chr7 (485-537)||(21326981-21327033)
chr7 (469-537)||(28517430-28517498)
chr7 (479-535)||(45003042-45003098)
chr7 (486-537)||(27027773-27027824)
chr7 (487-534)||(38839240-38839287)
chr7 (439-537)||(5825139-5825237)
chr7 (487-537)||(40726623-40726673)
chr7 (479-528)||(32584506-32584555)
[»] chr1 (10 HSPs)
chr1 (430-533)||(30688414-30688517)
chr1 (479-537)||(24177654-24177712)
chr1 (487-537)||(34644480-34644530)
chr1 (486-536)||(45835330-45835380)
chr1 (439-535)||(5453961-5454057)
chr1 (479-534)||(28493477-28493532)
chr1 (485-535)||(2764391-2764441)
chr1 (479-529)||(2898608-2898658)
chr1 (485-525)||(1114023-1114063)
chr1 (424-460)||(10348636-10348672)
[»] chr4 (13 HSPs)
chr4 (479-537)||(39001303-39001361)
chr4 (479-535)||(53619492-53619548)
chr4 (479-537)||(3329902-3329960)
chr4 (487-537)||(4419177-4419227)
chr4 (439-537)||(30940875-30940973)
chr4 (486-535)||(48657060-48657109)
chr4 (422-537)||(26521338-26521452)
chr4 (481-535)||(45661599-45661653)
chr4 (487-537)||(55933603-55933653)
chr4 (504-537)||(16955391-16955424)
chr4 (479-528)||(50464448-50464497)
chr4 (504-536)||(18981682-18981714)
chr4 (485-537)||(50442622-50442674)
[»] chr2 (8 HSPs)
chr2 (481-537)||(13413259-13413315)
chr2 (485-537)||(17344550-17344602)
chr2 (479-537)||(4413209-4413267)
chr2 (479-537)||(9685558-9685616)
chr2 (422-514)||(30602338-30602430)
chr2 (499-534)||(41868054-41868089)
chr2 (479-537)||(18745097-18745155)
chr2 (505-537)||(44686348-44686380)
[»] scaffold0148 (1 HSPs)
scaffold0148 (484-537)||(33161-33214)


Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 23 - 406
Target Start/End: Original strand, 34458815 - 34459198
Alignment:
Q  23 ttggaagagatggaagatactccaacagatgaagagaaagcaacatacaaggaggcaaggaagaagggatatgaaggacaatttattcttgaccagtgtg 122  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  34458815 ttggaagagttggaagatactccaacagatgaagagaaagcaacatacaaggaggcaaagaagaagggatatgaagcacaatttattctcgaccagtgtg 34458914  T
Q  123 tagatgcatcaaactttgaagagattgcaatggttgaaacatcaaaggatgcatgggatattattttatcaatgtcctatgctggagttgacaaactgaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34458915 tagatgcatcaaactttgaagagattgcaatggttgaaacatcaaaggatgcatgggatattattttttcaatgtcctatgctggagttgacaaactgaa 34459014  T
Q  223 gaaggtgaaaaggtctcacatcaggtgatagttgataatatcttgagaagattgacatcaagacttcaccaccttgttgtggccattgaagaatcaaaga 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34459015 gaaggtgaaaaggtctcacatcaggtgatagttgataatatcttgagaagattgacatcaagacttcaccaccttgttgtggccattgaagaatcaaaga 34459114  T
Q  323 atattgtagaaatgaagtttggggagttgcaaggatctcttgaaggtcatgagcataggctcggtgaaagagaagcagagaaaa 406  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34459115 atattgtagaaatgaagtttgaggagttgcaaggatctcttgaaggtcatgagcataggctcggtgaaagagaagcagagaaaa 34459198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 484 - 610
Target Start/End: Original strand, 34475952 - 34476078
Alignment:
Q  484 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctaggctcaatattgttcaaaaaatgatgttgatcatatcaaaaataagaa 583  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34475952 gcctttttggacggaaaaaacaatcttcgtaaacacaacattcatggacctaggctcaatattgttcaaaaaatgatgttgatcatatcaaaaataagaa 34476051  T
Q  584 aggaaaaggaaagattaatactaatag 610  Q
    ||||||| ||||||| || ||||||||    
T  34476052 aggaaaatgaaagatcaagactaatag 34476078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 430514 - 430566
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||| || | || ||||||||||||||||||||||||||||||||||    
T  430514 cctttttggatggcataatcaatcctcgtaaacacaacattcatggacctagg 430566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 2566296 - 2566238
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||| |||||||||||||||||||||| ||||| |||||    
T  2566296 gctagacctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctagg 2566238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 15292218 - 15292168
Alignment:
Q  487 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||| || |||| |||||||| |||||||||||||||||||||||||    
T  15292218 tttttggatggcaaaatcaatcctcataaacacaacattcatggacctagg 15292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 32269990 - 32269940
Alignment:
Q  487 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||| ||  ||| ||||||||||||||||||||||||||||||||||    
T  32269990 tttttggatggcgaaatcaatcctcgtaaacacaacattcatggacctagg 32269940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 23023502 - 23023559
Alignment:
Q  480 ctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||||||||| |  |||| ||||| ||||||||||||||||||| ||||||||    
T  23023502 ctaggcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctagg 23023559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 537
Target Start/End: Original strand, 35310364 - 35310412
Alignment:
Q  489 tttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||| || |||| |||| |||||||||||||||||||||||||||||    
T  35310364 tttggatggcaaaaccaattctcgtaaacacaacattcatggacctagg 35310412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 467
Target Start/End: Original strand, 34475919 - 34475950
Alignment:
Q  436 taattacacatgaacggaaggcaagcaggtaa 467  Q
    ||||||||||||||||||||||||||||||||    
T  34475919 taattacacatgaacggaaggcaagcaggtaa 34475950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 526
Target Start/End: Complemental strand, 15506814 - 15506769
Alignment:
Q  481 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattc 526  Q
    ||||||||||| || || |||| |||||||||||||||||||||||    
T  15506814 taggccttttttgatggtaaaatcaatcctcgtaaacacaacattc 15506769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 25663208 - 25663175
Alignment:
Q  504 caatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||||||| |||||||||||||||||||    
T  25663208 caatcctcgtaaactcaacattcatggacctagg 25663175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 37873839 - 37873782
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctag 536  Q
    ||||||||||||| ||  | |||| |||||||| |||||||||||||||| |||||||    
T  37873839 gctaggccttttttgatagcaaaatcaatcctcttaaacacaacattcatagacctag 37873782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 422 - 537
Target Start/End: Original strand, 38815143 - 38815258
Alignment:
Q  422 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 521  Q
    |||||||||| || |  |||||||||||  |||||||||| || || |||| | |  |||| ||||||||||| || |||| ||||||||||||||||||    
T  38815143 tatatatcaaggattgcttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaa 38815242  T
Q  522 cattcatggacctagg 537  Q
    ||||||||||||||||    
T  38815243 cattcatggacctagg 38815258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 3187882 - 3187934
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||| || |||| |||| |||||||||||||||||||||||||||||    
T  3187882 cctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctagg 3187934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 39434573 - 39434625
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatgga 531  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||||    
T  39434573 gctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatgga 39434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 4699782 - 4699835
Alignment:
Q  484 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||||| || ||||  |||||| ||||||||||||||||||||||||||    
T  4699782 gcctttttggatggcaaaactaatccttgtaaacacaacattcatggacctagg 4699835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 500153 - 500201
Alignment:
Q  484 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggac 532  Q
    ||||||||| | || |||| |||||||||||||||||||||||||||||    
T  500153 gcctttttgaatggtaaaatcaatcctcgtaaacacaacattcatggac 500201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 537
Target Start/End: Original strand, 8882276 - 8882308
Alignment:
Q  505 aatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||||||||||||||||||||||||||    
T  8882276 aatcctcgtaaacacaacattcatggacctagg 8882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 535
Target Start/End: Complemental strand, 22589537 - 22589481
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    ||||| |||||||||| || |||| |||||||||| |||||||||||||| ||||||    
T  22589537 gctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatagaccta 22589481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 527
Target Start/End: Original strand, 4073397 - 4073488
Alignment:
Q  436 taattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattca 527  Q
    |||||||||||||  ||||||||||| || || |||  |||| |||| || |||||||| |  |||| |||| |||||||||||||||||||    
T  4073397 taattacacatgattggaaggcaagcgggaaacaagttgtgtcgctaagcttttttggatgataaaatcaattctcgtaaacacaacattca 4073488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 24451047 - 24451084
Alignment:
Q  500 aaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  24451047 aaaacaatcatcgtgaacacaacattcatggacctagg 24451084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 523
Target Start/End: Original strand, 18804479 - 18804563
Alignment:
Q  439 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaaca 523  Q
    |||||| ||||  ||||||||||||| || |||| | |  ||||| |||||||||| || |||| ||||||||||||||| ||||    
T  18804479 ttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacaaaaca 18804563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 103012 - 103070
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  103012 gctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 103070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 3137448 - 3137390
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  3137448 gctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 3137390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 959489 - 959545
Alignment:
Q  481 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||||| || |  |||| ||||||||||||||||||||||||||||||||||    
T  959489 taggcctttttagatgacaaaatcaatcctcgtaaacacaacattcatggacctagg 959545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 537
Target Start/End: Original strand, 34168770 - 34168884
Alignment:
Q  422 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 521  Q
    ||||||| ||||| ||||||||||||||  |||||||||| ||  | |||  | |  ||||||||||||||||  | |||| |||||||||| |||||||    
T  34168770 tatatataaatgattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatcctcgt-aacacaa 34168868  T
Q  522 cattcatggacctagg 537  Q
    |||||||||| |||||    
T  34168869 cattcatggatctagg 34168884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 7749387 - 7749441
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacc 533  Q
    ||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||    
T  7749387 gctagaccttttaggatggcaaaaccaatcctcgtaaacacaacattcatggacc 7749441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 529
Target Start/End: Complemental strand, 17249506 - 17249456
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 529  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||||||||    
T  17249506 gctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatg 17249456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 29338280 - 29338222
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||| |||||||  | |||| ||||||| ||||||||||||||||||||||||||    
T  29338280 gctaggccattttggatagaaaaatcaatccttgtaaacacaacattcatggacctagg 29338222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 32115644 - 32115682
Alignment:
Q  499 aaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  32115644 aaaatcaatcatcgtaaacacaacattcatggacctagg 32115682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 529
Target Start/End: Complemental strand, 34554476 - 34554427
Alignment:
Q  480 ctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 529  Q
    ||||||||||||||| |  |||| |||||||||||||||||| |||||||    
T  34554476 ctaggcctttttggatgacaaaatcaatcctcgtaaacacaaaattcatg 34554427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 537
Target Start/End: Complemental strand, 357891 - 357859
Alignment:
Q  505 aatcctcgtaaacacaacattcatggacctagg 537  Q
    |||| ||||||||||||||||||||||||||||    
T  357891 aatcttcgtaaacacaacattcatggacctagg 357859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 439 - 537
Target Start/End: Original strand, 26772624 - 26772722
Alignment:
Q  439 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||||  | |||||||| || || |||| | |  ||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  26772624 ttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctagg 26772722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 32546701 - 32546759
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||| |||||||||| |||||||||||||||||||||||    
T  32546701 gctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacctagg 32546759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 537
Target Start/End: Original strand, 13582389 - 13582474
Alignment:
Q  452 gaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||| || || || ||| || |||||||||||||||| ||  ||| ||||| ||||||||||||||||||||| ||||||    
T  13582389 gaaggcaagcgggcaataaacagcgtcgctaggcctttttggatggctaaatcaatcttcgtaaacacaacattcatggtcctagg 13582474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 39583430 - 39583372
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||| |||||||||||||||| ||||||||| |||||||    
T  39583430 gctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacctagg 39583372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 535
Target Start/End: Original strand, 26276528 - 26276577
Alignment:
Q  486 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    ||||||||| || |||| |||||||| |||||||||||||||||||||||    
T  26276528 ctttttggatggcaaaatcaatcctcataaacacaacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 53785621 - 53785673
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||| ||||| || |||| ||||||||||||||| ||||||||||||||||||    
T  53785621 ccttgttggatggcaaaaccaatcctcgtaaacataacattcatggacctagg 53785673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 26856963 - 26856905
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||||||||| || |||| ||||||||| || ||||||||||||  |||||||    
T  26856963 gctaggcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctagg 26856905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 38671061 - 38671023
Alignment:
Q  499 aaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  38671061 aaaaccaatcctcgtacacacaacattcatggacctagg 38671023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 44198614 - 44198731
Alignment:
Q  420 tgtatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacac 519  Q
    ||||||||| ||| | || |||||| ||||  |||||||||| |  || |||| |||| |||   |||||||||| || |||| ||||  ||| ||||||    
T  44198614 tgtatatataaattattatttacacttgaatagaaggcaagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaattatcgcaaacac 44198713  T
Q  520 aacattcatggacctagg 537  Q
    ||||||||||||||||||    
T  44198714 aacattcatggacctagg 44198731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 535
Target Start/End: Original strand, 49017880 - 49017929
Alignment:
Q  486 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    ||||||||| || |||| |||||||| |||||||||||||||| ||||||    
T  49017880 ctttttggatggcaaaatcaatcctcataaacacaacattcattgaccta 49017929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 533
Target Start/End: Complemental strand, 4763967 - 4763939
Alignment:
Q  505 aatcctcgtaaacacaacattcatggacc 533  Q
    |||||||||||||||||||||||||||||    
T  4763967 aatcctcgtaaacacaacattcatggacc 4763939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 5338551 - 5338599
Alignment:
Q  478 agctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattc 526  Q
    |||||| || ||||||| || |||| |||||||||||||||||||||||    
T  5338551 agctagaccattttggatggcaaaaccaatcctcgtaaacacaacattc 5338599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 48539094 - 48539145
Alignment:
Q  486 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 48539145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 45614043 - 45613985
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||||||    
T  45614043 gctagaccttttcggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 45613985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 532
Target Start/End: Original strand, 982828 - 982908
Alignment:
Q  452 gaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggac 532  Q
    |||||||| |||| || |||| |||| ||||| |||||||||| || || | |||||||||| ||||||||||||||||||    
T  982828 gaaggcaaacaggcaacaagctgtgtcgctagacctttttggatggcaataccaatcctcgtgaacacaacattcatggac 982908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 21327033 - 21326981
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||| || |||| |||||||||| |||||||||||||||||||||||    
T  21327033 cctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacctagg 21326981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 28517498 - 28517430
Alignment:
Q  469 aagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||| |||| ||||| | |||||||| || |||| ||||||||||||||||||||||||||||| ||||    
T  28517498 aagctgtgtcgctagacttttttggatggcaaaaccaatcctcgtaaacacaacattcatggacttagg 28517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 535
Target Start/End: Complemental strand, 45003098 - 45003042
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    ||||| |||||||||| || |||| ||||| ||||||||||||||||||||| ||||    
T  45003098 gctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtccta 45003042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 27027824 - 27027773
Alignment:
Q  486 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||  | |||| |||||||||| |||||||||||||||||||||||    
T  27027824 ctttttggatagcaaaaccaatcctcgtgaacacaacattcatggacctagg 27027773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 534
Target Start/End: Original strand, 38839240 - 38839287
Alignment:
Q  487 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacct 534  Q
    |||||||| || |||| ||||| |||||||||||||||||||||||||    
T  38839240 tttttggatggtaaaaccaatcttcgtaaacacaacattcatggacct 38839287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 537
Target Start/End: Original strand, 5825139 - 5825237
Alignment:
Q  439 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||||  | |||||||||||||| |||| | |  |  || ||||||| || || |||| ||||||||||||||||||||| ||| ||||||||    
T  5825139 ttacacatgaataggaggcaagcaggtaacaagctgcgccgtaagacctttttcgatggcaaaaccaatcctcgtaaacacaacatccatagacctagg 5825237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 40726673 - 40726623
Alignment:
Q  487 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||| || |||| |||||||| ||||||||||||||||||| |||||    
T  40726673 tttttggatggcaaaatcaatcctcataaacacaacattcatggatctagg 40726623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 32584506 - 32584555
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcat 528  Q
    |||||||||||||||| || |||| ||||| | |||||||||||||||||    
T  32584506 gctaggcctttttggatggtaaaatcaatctttgtaaacacaacattcat 32584555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 533
Target Start/End: Original strand, 30688414 - 30688517
Alignment:
Q  430 aatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 529  Q
    ||||| ||||||||||||||  || ||||||| || || |||| | |  ||||||||||||||||    |||| ||||||||||||||||||||||||||    
T  30688414 aatgattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattcatg 30688513  T
Q  530 gacc 533  Q
    ||||    
T  30688514 gacc 30688517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 24177712 - 24177654
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||  || |||| |||||||||| |||||||||||||||||||||||    
T  24177712 gctagacctttttggttggcaaaaccaatcctcgtgaacacaacattcatggacctagg 24177654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 537
Target Start/End: Original strand, 34644480 - 34644530
Alignment:
Q  487 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||| || |||| ||||| ||||||||||||||||||||||||||||    
T  34644480 tttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctagg 34644530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 536
Target Start/End: Complemental strand, 45835380 - 45835330
Alignment:
Q  486 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctag 536  Q
    ||||||||| || |||| ||||||||||||||||||||||||| |||||||    
T  45835380 ctttttggatggcaaaatcaatcctcgtaaacacaacattcatagacctag 45835330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 535
Target Start/End: Original strand, 5453961 - 5454057
Alignment:
Q  439 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    |||||||||||  | |||||||| || || |||| | |  ||||| |||||||||| |  |||| ||||||| ||||||||||||||||||||||||    
T  5453961 ttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaacattcatggaccta 5454057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Complemental strand, 28493532 - 28493477
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacct 534  Q
    ||||| |||||||||| || |||| |||||||||| |||| |||||||||||||||    
T  28493532 gctagacctttttggatggcaaaatcaatcctcgtgaacataacattcatggacct 28493477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 2764391 - 2764441
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    |||||||||| || |||| ||||| |||||||||||||||| |||||||||    
T  2764391 cctttttggatggtaaaatcaatcatcgtaaacacaacatttatggaccta 2764441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 529
Target Start/End: Original strand, 2898608 - 2898658
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatg 529  Q
    |||| ||||||||||| || |||| |||||||| |||||||||||||||||    
T  2898608 gctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatg 2898658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 1114063 - 1114023
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacatt 525  Q
    |||||||||| || |||| ||||||||||||||||||||||    
T  1114063 cctttttggatggcaaaaccaatcctcgtaaacacaacatt 1114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 10348672 - 10348636
Alignment:
Q  424 tatatcaatgactaattacacatgaacggaaggcaag 460  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  10348672 tatatcaatgactaattacacatgaatggaagacaag 10348636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 39001303 - 39001361
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| |  |||| ||||||||||||||||||||||||||||||||||    
T  39001303 gctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctagg 39001361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 535
Target Start/End: Original strand, 53619492 - 53619548
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    ||||| |||||||||| || |||| |||| |||||||||||||||||||||||||||    
T  53619492 gctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggaccta 53619548  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 3329902 - 3329960
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||| ||||| ||||||||||| ||||||||||||||||    
T  3329902 gctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctagg 3329960  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 537
Target Start/End: Original strand, 4419177 - 4419227
Alignment:
Q  487 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||| || |||| ||||| ||||||||||||||||||||||||||||    
T  4419177 tttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctagg 4419227  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 537
Target Start/End: Complemental strand, 30940973 - 30940875
Alignment:
Q  439 ttacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||| ||||  |||||||||| || || |||| | || ||||| |||||||||| || |||| |||||||| | |||||||||||||| ||||||||    
T  30940973 ttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatagacctagg 30940875  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 535
Target Start/End: Complemental strand, 48657109 - 48657060
Alignment:
Q  486 ctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    |||||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  48657109 ctttttggacggcaaaatcaatcatcgtaaacacaacattcatagaccta 48657060  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 537
Target Start/End: Original strand, 26521338 - 26521452
Alignment:
Q  422 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgtaaacacaa 521  Q
    |||||||||| || || ||||||||| |  |||||||||| |  ||||||| |||  ||||  |||||||||| |  |||| ||||||||||||||||||    
T  26521338 tatatatcaaggattacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaa 26521437  T
Q  522 cattcatggacctagg 537  Q
    || |||||| ||||||    
T  26521438 ca-tcatgggcctagg 26521452  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 45661599 - 45661653
Alignment:
Q  481 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggaccta 535  Q
    |||| |||||||||  | |||| |||||||||||||||||| |||||||||||||    
T  45661599 taggtctttttggatagtaaaaccaatcctcgtaaacacaatattcatggaccta 45661653  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 55933653 - 55933603
Alignment:
Q  487 tttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||| || |||| ||||| |||||||||||||||||| |||||||||    
T  55933653 tttttggatggcaaaatcaatcatcgtaaacacaacattcacggacctagg 55933603  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Original strand, 16955391 - 16955424
Alignment:
Q  504 caatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||||||||||||||||||||| ||||||    
T  16955391 caatcctcgtaaacacaacattcatgggcctagg 16955424  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Complemental strand, 50464497 - 50464448
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcat 528  Q
    |||||| ||||||||| || ||||  ||||||||||||||||||||||||    
T  50464497 gctaggtctttttggatggcaaaataaatcctcgtaaacacaacattcat 50464448  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 536
Target Start/End: Complemental strand, 18981714 - 18981682
Alignment:
Q  504 caatcctcgtaaacacaacattcatggacctag 536  Q
    ||||| |||||||||||||||||||||||||||    
T  18981714 caatcatcgtaaacacaacattcatggacctag 18981682  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 50442674 - 50442622
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||| || |||| |||||||| |||||||||||| |||| |||||||    
T  50442674 cctttttggatggcaaaaccaatcctcttaaacacaacatccatgaacctagg 50442622  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 13413259 - 13413315
Alignment:
Q  481 taggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    |||||||||||||| || |||| |||| ||| |||||||||||||||||||||||||    
T  13413259 taggcctttttggatggcaaaaccaattctcataaacacaacattcatggacctagg 13413315  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 17344550 - 17344602
Alignment:
Q  485 cctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||||  | |||| ||||||||||||||||||||||||||||||||||    
T  17344550 cctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacctagg 17344602  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 4413267 - 4413209
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||| |||||||| | |||||||||||||||||||||||    
T  4413267 gctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatggacctagg 4413209  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 9685616 - 9685558
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||||||||| | || |||||||||||||||||||||||    
T  9685616 gctagacctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctagg 9685558  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 514
Target Start/End: Original strand, 30602338 - 30602430
Alignment:
Q  422 tatatatcaatgactaattacacatgaacggaaggcaagcaggtaaaaagcagtgtagctaggcctttttggacgggaaaaacaatcctcgta 514  Q
    |||||||||| || ||||||||||||||  ||||||| || || || |||| | |  |||||||||||||||| || |||| |||||||||||    
T  30602338 tatatatcaaggattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctcgta 30602430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 534
Target Start/End: Complemental strand, 41868089 - 41868054
Alignment:
Q  499 aaaaacaatcctcgtaaacacaacattcatggacct 534  Q
    |||| |||||||||||||||||||||||||||||||    
T  41868089 aaaaccaatcctcgtaaacacaacattcatggacct 41868054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 18745155 - 18745097
Alignment:
Q  479 gctaggcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||| |||||||||| || |||| |||||||  |||||||||||||||| ||||||||    
T  18745155 gctagacctttttggatggcaaaaccaatccttataaacacaacattcatagacctagg 18745097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 537
Target Start/End: Original strand, 44686348 - 44686380
Alignment:
Q  505 aatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||||||||||||||||| |||||||||    
T  44686348 aatcctcgtaaacacaacattcacggacctagg 44686380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 33161 - 33214
Alignment:
Q  484 gcctttttggacgggaaaaacaatcctcgtaaacacaacattcatggacctagg 537  Q
    ||||||||||| |  |||| |||||||||||||||| || ||||||||||||||    
T  33161 gcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacctagg 33214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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