View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13736_high_12 (Length: 282)
Name: NF13736_high_12
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 47283931 - 47283683
Alignment:
| Q |
22 |
ccgcctcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaat |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47283931 |
ccgcctcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaat |
47283832 |
T |
|
| Q |
122 |
aaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47283831 |
aaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagc |
47283732 |
T |
|
| Q |
222 |
ttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47283731 |
ttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataat |
47283683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 47279338 - 47279090
Alignment:
| Q |
22 |
ccgcctcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaat |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
47279338 |
ccgcctcaccccatccaaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacaagatcttattgttgtaaataaacatcgttccttaat |
47279239 |
T |
|
| Q |
122 |
aaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
47279238 |
aaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccataacctaaaggatttccacaaagc |
47279139 |
T |
|
| Q |
222 |
ttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataat |
270 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47279138 |
ttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataat |
47279090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 47243057 - 47242829
Alignment:
| Q |
27 |
tcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataacca |
126 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||| | || || || | ||| | |||| | ||||||||||||||||||||||||||||||| |
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|
| T |
47243057 |
tcaccccatccgaaattcacttctgagaaattagcacgagtccaatccgacactatacaagttcttccagttgtaaataaacatcgttccttaataacca |
47242958 |
T |
|
| Q |
127 |
taagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccc |
226 |
Q |
| |
|
||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |
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|
| T |
47242957 |
taaaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctt |
47242858 |
T |
|
| Q |
227 |
tgcggtggtgacagcagccgggaaagcaa |
255 |
Q |
| |
|
||||||||||||||| |||| |||||||| |
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|
| T |
47242857 |
tgcggtggtgacagccgccgagaaagcaa |
47242829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 270
Target Start/End: Complemental strand, 47257184 - 47256941
Alignment:
| Q |
27 |
tcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataacca |
126 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| | ||||| || | ||| | |||| | |||||||||||||||||||||||||||||| |
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|
| T |
47257184 |
tcaccccatccgaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttccttaataacca |
47257085 |
T |
|
| Q |
127 |
taagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccc |
226 |
Q |
| |
|
||| ||||||||| || |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |
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|
| T |
47257084 |
taaaatctgccaatgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctt |
47256985 |
T |
|
| Q |
227 |
tgcggtggtgacagcagccgggaaagcaaaacagttaccataat |
270 |
Q |
| |
|
|||||||||||| || |||| |||||||| |||||| ||||||| |
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| T |
47256984 |
tgcggtggtgactgccgccgagaaagcaatacagttgccataat |
47256941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 47298894 - 47299132
Alignment:
| Q |
27 |
tcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataacca |
126 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||||||||| ||||| | || ||| || ||||| |||||||||||||| |||||||||||||||| |
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|
| T |
47298894 |
tcaccccatccgaaattcacttctgagagcctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacaccgttccttaataacca |
47298993 |
T |
|
| Q |
127 |
taagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccc |
226 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||||||| || ||||||||||||||||||| |
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| T |
47298994 |
taagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggtttccacaaagcttcct |
47299093 |
T |
|
| Q |
227 |
tgcggtggtgacagcagccgggaaagcaaaacagttacc |
265 |
Q |
| |
|
||| |||||||| || || ||| |||||||||||||||| |
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|
| T |
47299094 |
tgcagtggtgacggccgctgggtaagcaaaacagttacc |
47299132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 270
Target Start/End: Original strand, 47292287 - 47292530
Alignment:
| Q |
27 |
tcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataacca |
126 |
Q |
| |
|
|||||||| || ||||||||||||| | | ||||||||||||| ||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |
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|
| T |
47292287 |
tcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataacca |
47292386 |
T |
|
| Q |
127 |
taagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccc |
226 |
Q |
| |
|
||||||| |||| ||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||||||||||| || || ||||||||||||||||| |
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|
| T |
47292387 |
taagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataaccaaatggatttccacaaagcttccc |
47292486 |
T |
|
| Q |
227 |
tgcggtggtgacagcagccgggaaagcaaaacagttaccataat |
270 |
Q |
| |
|
||| |||||||| || || ||| |||||||||||||||| |||| |
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|
| T |
47292487 |
tgcagtggtgacggccgctgggtaagcaaaacagttaccgtaat |
47292530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 72 - 265
Target Start/End: Complemental strand, 47267916 - 47267723
Alignment:
| Q |
72 |
tctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagctt |
171 |
Q |
| |
|
||||| |||||||| || |||| |||||||||||||| || || |||||||||||||||||||| | ||||||||| ||||| |||||||||| ||||| |
|
|
| T |
47267916 |
tctgaaacaacacaagaccttatagttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagctt |
47267817 |
T |
|
| Q |
172 |
ttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttacc |
265 |
Q |
| |
|
|| |||||||| ||| ||||| ||||||||||| | ||||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| |
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|
| T |
47267816 |
ttaattttcttaccaactccacagcataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattacc |
47267723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 270
Target Start/End: Complemental strand, 32731724 - 32731481
Alignment:
| Q |
27 |
tcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataacca |
126 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| | ||||| || | ||| | |||| | ||||||||||||||||||||||||||||||| |
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|
| T |
32731724 |
tcaccccatccgaaattcacttctgataaattagcacgagtccaatctgacaccatacaagttcttccggttgtaaataaacatcgttccttaataacca |
32731625 |
T |
|
| Q |
127 |
taagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccc |
226 |
Q |
| |
|
|| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |
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|
| T |
32731624 |
tacaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctt |
32731525 |
T |
|
| Q |
227 |
tgcggtggtgacagcagccgggaaagcaaaacagttaccataat |
270 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||| ||||| |||| |
|
|
| T |
32731524 |
tgcggtggtgacagccgccgagaaagcaatacaattaccgtaat |
32731481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 20519737 - 20519638
Alignment:
| Q |
23 |
cgcctcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaata |
122 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||| ||||| ||||| | |||||| | ||||| ||||||| ||||||||||||||||||| |
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|
| T |
20519737 |
cgcctcaccccatccaaaattcacttctctgaacttagcacgtgtcaaatctgacataacacaacaacttacagttgtaagtaaacatcgttccttaata |
20519638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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