View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13736_high_3 (Length: 636)
Name: NF13736_high_3
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 46959682 - 46959068
Alignment:
| Q |
1 |
tgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaatatagttttgaattgtctttatgatttgtagaatataatagc |
100 |
Q |
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| T |
46959682 |
tgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaatatagttttgaattgtctttatgatttgtagaatataatagc |
46959583 |
T |
|
| Q |
101 |
tgatttcataattttcatcgattataatcatgtatgtcagtgacatacattcttgtcaatctcctacaaggattcaaattaatgaactttcataatgatt |
200 |
Q |
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| T |
46959582 |
tgatttcataattttcatcaattataatcatgt----cagtgacatacattcttgtcaatctcctacaaggattcaaattaatgaactttcataatgatt |
46959487 |
T |
|
| Q |
201 |
ttaattcaactgaagannnnnnnctgtaagaatgtaataatgtcctgaattgtgatgcagacttcagctgttcaagtggcgaacatatccttcattaata |
300 |
Q |
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| T |
46959486 |
ttaattcaactgatgatttttttctgtaagaatgtaataatgtcctgaattgtgatgcagacttcagctgttcaagtggtgaacatatccttcattaata |
46959387 |
T |
|
| Q |
301 |
ttataggaacttcggcctccaaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggactatatctcgaaaatatttatcttccatcata |
400 |
Q |
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| T |
46959386 |
ttataggaacttcggcctccgaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggactacatctcgaaaatatttatcttccatcata |
46959287 |
T |
|
| Q |
401 |
ctttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtgat |
500 |
Q |
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| T |
46959286 |
ctttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgtgtgaatcctcccgcttgtttttcaacaagtagtgat |
46959187 |
T |
|
| Q |
501 |
ttgattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaatgacaatgggatggaatgagtagatgaacccttcatgttagat |
600 |
Q |
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| T |
46959186 |
ttgattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaatgacaatgggatattctgtacagatgaacccttcatgttagat |
46959087 |
T |
|
| Q |
601 |
gttggtttaaggcaattag |
619 |
Q |
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| T |
46959086 |
gttggtttaaggcaattag |
46959068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 134 - 546
Target Start/End: Original strand, 44522569 - 44522972
Alignment:
| Q |
134 |
atgtcagtgacatacattcttgtc-aatctcctacaaggattcaaattaatgaactttcataatgattttaattcaactgaagannnnnnnctgtaagaa |
232 |
Q |
| |
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||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |||||| || |||| |||||||||||||| |||||| || |
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| T |
44522569 |
atgtcagtgacatacattcctgtcgaatctccaacaaggattcaaattaatgaagtttcatgataattt-aattcaactgaagatattatgctgtaaaaa |
44522667 |
T |
|
| Q |
233 |
tgtaataatgtcctgaattgtgatgcagacttcagctgttcaagtggcgaacatatccttcattaatattataggaacttcggcctccaaagaaaccatt |
332 |
Q |
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| |||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
44522668 |
tttaat---gtaatgcattgtgatgcagacttcagctgttcaagtggggaacatatccttcattaatattcaaggaacttcggccaccgaagaaaccatt |
44522764 |
T |
|
| Q |
333 |
aaatttgcctgcagtgatacctatccatgtgaaggactatatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggc |
432 |
Q |
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|||||||||||||||||| | | |||||| |||||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||| ||||||| |
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| T |
44522765 |
aaatttgcctgcagtgatgcttctccatgcgaaggactatatctggaaaatatttttcttcgatcatactttggaggaaatacaagatcttattgttggc |
44522864 |
T |
|
| Q |
433 |
aagctcatggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtgatttgattcgacagaatgtcttgttagagacaaa |
532 |
Q |
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| T |
44522865 |
aagctcatgg------ttctgctcagggttatgtgtaccctcctgtctgcttttcgacaagtagtgatttaattagacagaatgtcttgttagagccaaa |
44522958 |
T |
|
| Q |
533 |
tcctgatattaatt |
546 |
Q |
| |
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||||| |||||||| |
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|
| T |
44522959 |
tcctgctattaatt |
44522972 |
T |
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