View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13736_low_1 (Length: 954)
Name: NF13736_low_1
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 914; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 914; E-Value: 0
Query Start/End: Original strand, 1 - 954
Target Start/End: Original strand, 34615867 - 34616820
Alignment:
| Q |
1 |
acgttacgtgcatataatgttactcttatgggttagttagagctaaggaatcgtgtctgtcatacatactcaacaaaagaaaaatattttaaggaaccca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34615867 |
acgttacgtgcatataatgttactgttatgggttagttagagctaaggaatcgtttctgtcatacatactcaacaaaagaaaaatattttaaggaaccca |
34615966 |
T |
|
| Q |
101 |
agcttgtctaaagtcaacacagtatacatatttagctgaactaccactacctttttcggtgttttacacagtttgtaggtaaggaaggtagccacacacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34615967 |
agcttgtctaaagtcaacacagtatacatatttagctgaactaccactacctttttcggtgttttacacagtttgtaggtaaggaaggtagccacacacc |
34616066 |
T |
|
| Q |
201 |
acagtacatattgcagaaccaaccaatccacccccaacagtattttcacaaatagtattcaaataaggaatgtctgcataaatcatcaacaaaagggtgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34616067 |
acagtacatattgcagaaccaaccaatccacccccaacagtattttcacaattagtattcaaataaggaatgtctgcataaagcatcaacaaaagggtgt |
34616166 |
T |
|
| Q |
301 |
taccattttttatcacaaaaatctgagagaccactactaagcaaataactagtattcatgtcagatcatcagagacagagaatccatcctatgaatgtgg |
400 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34616167 |
taccattttttatcacaaaaatctgagagaacactactaagcaaataactagtattcatgtcagatcatcagagacagagaatccaccctatgaatgtgg |
34616266 |
T |
|
| Q |
401 |
aaacaaaaccacaccctaggacaccattagtacctccaggttcctctagatcagaaaaggttatccatgtgcctcctccaatgctgcatcaacatgctat |
500 |
Q |
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| T |
34616267 |
aaacaaaaccacaccctaggacaccattagtacctccaggttcctctagatcagaaaaggttatccatgtgcctcctccaatactgcatcaacatgctat |
34616366 |
T |
|
| Q |
501 |
gccagcaataaactcttcaaaaccaaaaagaagctgtttttgcaagtgtatatgttggacgataagcttgttattccttcttctcattatcattgcagca |
600 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34616367 |
gccagcaataaactcttcaaagccaaaaataagctgtttttgcaagtgtatatgttggacaataagcttgttattccttcttctcattatcattgcagca |
34616466 |
T |
|
| Q |
601 |
actgcaggagccctttacctcatcttcaaaccaaagcttcccaattactcagttgatacactgaggataagtgatctgagacttaactttgacttgagtc |
700 |
Q |
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| T |
34616467 |
actgcaggagccctttacctcatcttcaaaccaaagcttcccaattactcagttgatacactgaggataagtgatctgagacttaactttgacttgagtc |
34616566 |
T |
|
| Q |
701 |
tgtatgcaaagtttgatgtgaagatcacagcaaccaacccaaacaagaagattggtatttactatgagaaaggagggaagttgagtgtattgtacacaaa |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616567 |
tgtatgcaaagtttgatgtgaagatcacagcaaccaacccaaacaagaagattggtatttactatgagaaaggagggaagttgagtgtattgtacacaaa |
34616666 |
T |
|
| Q |
801 |
cacaaagctttgtgaagggtctttacctaaattctaccaaggtcatcagaacaaaacagtgcttaatgtgtcgttaacaggtcaagttcagtctggaaac |
900 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616667 |
cacaaagctttgtgaagggtctttacctaaattctaccaaggtcatcagaacaaaacagtgcttaatgtgtcgttaacaggtcaagttcagtctggaaac |
34616766 |
T |
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| Q |
901 |
acgttaatggcggctttgcagcagcaacagcagacaggaagaattccgttggat |
954 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616767 |
acgttaatggcggctttgcagcagcaacagcagacaggaagaattccgttggat |
34616820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 2476172 - 2476269
Alignment:
| Q |
135 |
gctgaactaccactacctttttcggtgttttacacagtttgtaggtaaggaaggtagccacacaccacagtacatattgcagaaccaaccaatccacc |
232 |
Q |
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| T |
2476172 |
gctgaactaccactatctttttgagatttacacacggtttgtaggtaaggaaggtaaccacataccaaagtacctcttgtggaaccaaccaatccacc |
2476269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 2461904 - 2461955
Alignment:
| Q |
484 |
ctgcatcaacatgctatgccagcaataaactcttcaaaaccaaaaagaagct |
535 |
Q |
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||||||||||||||||| |||| |||||||| |||| ||||||| ||||||| |
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| T |
2461904 |
ctgcatcaacatgctataccagaaataaactattcacaaccaaagagaagct |
2461955 |
T |
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