View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13736_low_11 (Length: 349)
Name: NF13736_low_11
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 6810649 - 6810983
Alignment:
| Q |
1 |
gagtatacgttttcaaccatttatttattggtgttttattctagtcatgagagcttgactacagctagattttttattccttaagaagatgatatagtac |
100 |
Q |
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| T |
6810649 |
gagtatacgttttcaaccatttatttattggtgttttattctagtcatgagagcttgactacagctagattttttattccttaagaagatgatataggac |
6810748 |
T |
|
| Q |
101 |
actagaggaagaagttattttctcaaatttgtgacagtctggacttatattgagagaaatcatgtactgaaatttcttcgccaatttattttcatacggg |
200 |
Q |
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| T |
6810749 |
actagagggagaagttattttctcaaatttgtgacagtctggacttatattgagagaaatcatgtactgaaatttcttcgccaatttattttcatacggg |
6810848 |
T |
|
| Q |
201 |
cacttcccgataatatggtaaccaacgtcgcacaatccatgagcatgcatggttattttactagcaatttctgaattcaaataagcagacacattcagtt |
300 |
Q |
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| T |
6810849 |
cacttcccgataatatggtaaccaacgtcgcacaatccatgagcatgcatggttattttactagcaatttctgaattcaaataagcagacacattcagtt |
6810948 |
T |
|
| Q |
301 |
gctaataatatgtctccgcgatctcttgaagatat |
335 |
Q |
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| T |
6810949 |
gctaataatatgtctccgcaatctcttgaagatat |
6810983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6799591 - 6799782
Alignment:
| Q |
1 |
gagtatacgttttcaaccatttatttattggtgttttattctagtcatgagagcttgactacagctagattttttattccttaagaagatgatatagtac |
100 |
Q |
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| T |
6799591 |
gagtatacgttttcaaccattcattg------gtttcattctagtcatgagagcttgactacaactagattttt-atttattaaga---tgatataggat |
6799680 |
T |
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| Q |
101 |
actagaggaagaagttattttctcaaatttgtgacagtctggacttata-ttgagagaaatcatgtactgaaatttcttcgccaatttattttcatacgg |
199 |
Q |
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|||||| ||||| |||||| |||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
6799681 |
--tagagggagaagctattttatcaaatttgtgacagtctcaacatatgcttgagagaaatcatgtactgaaatttctttgccaacttattttcatacgg |
6799778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 6799779 - 6799888
Alignment:
| Q |
230 |
gcacaatccatgagcatgcatggttattttactagcaatttctgaattcaaat----aagcagacacattcagttgctaataatatgtctccgcgatctc |
325 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| || || | || |
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| T |
6799779 |
gcacaatccatgagcatgcatggttattttactagtaatttctgaattcaaatcaacagacagacacattcagttgctaataatatgtgtctgcaacttc |
6799878 |
T |
|
| Q |
326 |
ttgaagatat |
335 |
Q |
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|||||||||| |
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|
| T |
6799879 |
ttgaagatat |
6799888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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