View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13736_low_14 (Length: 314)
Name: NF13736_low_14
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_low_14 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 125 - 314
Target Start/End: Complemental strand, 31574659 - 31574470
Alignment:
| Q |
125 |
gagtgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatactttgttgtgaacatggttagataaagatgagaaaaacagatgacatgaatc |
224 |
Q |
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| T |
31574659 |
gagtgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaagacatgaatc |
31574560 |
T |
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| Q |
225 |
ttagtgatttgctgcttgctatggcatcaatttcagatcaataagttaccgcggagtcaacggttccaaatgcataacattacagatttt |
314 |
Q |
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| T |
31574559 |
ttagtgattggctgcttgctatggcatcaatttgagatcaaaaagttaccgcggaggcaacggttccaaatgcacaacattacggatttt |
31574470 |
T |
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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 314
Target Start/End: Complemental strand, 6509451 - 6509282
Alignment:
| Q |
128 |
tgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatactttgttgtgaacatggttagataaagatgagaaaaacagatgacatgaatctta |
227 |
Q |
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| T |
6509451 |
tgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatgctttgttttgaaca-----------------gaaaaacagaagacatgaatctta |
6509369 |
T |
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| Q |
228 |
gtgatttgctgcttgctatggcatcaatttcagatcaataagttaccgcggagtcaacggttccaaatgcataacattacagatttt |
314 |
Q |
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| T |
6509368 |
gtgattggctgcttgttatggcatcaatttgagatcaataagttaccgcaaaggcaacggtttccaatgcacaacataacggatttt |
6509282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 38028898 - 38028852
Alignment:
| Q |
167 |
caaatactttgttgtgaacatggttagataaagatgagaaaaacaga |
213 |
Q |
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| T |
38028898 |
caaatgctttgttttgaacatggttagataaagatgagaaaaacaga |
38028852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 38028996 - 38028963
Alignment:
| Q |
128 |
tgttgagttcatgcctgtttgcattgtggtcgtt |
161 |
Q |
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| T |
38028996 |
tgttgagttcatgcctgtttgcattgtggtcgtt |
38028963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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