View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13736_low_3 (Length: 695)
Name: NF13736_low_3
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 14430736 - 14430377
Alignment:
| Q |
20 |
gaagcctaagaagaataaaatgggaatgggattgggagcagggttgcttggaggtgctttaggtgggatgttgattggagatatgatgtctgatgcttct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14430736 |
gaagcctaagaagaataaaatgggaatgggattgggagcagggttgcttggaggtgctttaggtgggatgttgattggagatatgatttctgatgcttct |
14430637 |
T |
|
| Q |
120 |
tcttatgatgctggatatgatgctggctttgatgatggtggttttgat------------ttttaattcatgtcttgttagcatcatttcacttttggta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
14430636 |
tcttatgatgctggatatgatgctggctttgatgatggtggttttgatggtggttttgatttttaattcatctcttgttactatcatttcacttttggta |
14430537 |
T |
|
| Q |
208 |
tctgtttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtatttaacttttgatatataatataactcatg-ttgt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14430536 |
tctgtttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtatttaacttttgatatataatataactcatgtttgt |
14430437 |
T |
|
| Q |
307 |
gacatcaaatttggttttttgtaatttttgtatagtagcatatcatattttgttggcaaa |
366 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14430436 |
gacatcaaatttggttttttttaatttttgtatagtagcatatcatattttgttggcaaa |
14430377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 402 - 676
Target Start/End: Complemental strand, 14430374 - 14430091
Alignment:
| Q |
402 |
tgtgtagtttgtgaccatgaggattaggcttattgatgagaaattttagagcaactaaattaactgaataatcaaatcaactaaagaa---------cat |
492 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14430374 |
tgtgtagtttgtgagcatgaggattaggcttattgatgagaaattttagagcaactaaattaactgaataatcaaatcaactaaagaaacttataaacat |
14430275 |
T |
|
| Q |
493 |
cttggttgctaattttatcgtctcaaattgtggtccggattatggttacactgcgaacttttatattattgtataggcaagcagatgtgattataggcaa |
592 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14430274 |
cttggttgctaattttatcgtctcaaactgtggtccggattatggttacactgtgaacttttatattattgtataggcaagcagatgtgattataggcaa |
14430175 |
T |
|
| Q |
593 |
gctgaataattgaatctgagcaaagaaaatttctagaaggcttggttctgaatttctgattgctagtttgatggtttcaaattg |
676 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14430174 |
gctgaataattgaatctgagcagagaaaatttctagaaggtttggttctgaatttctgattgctagtttgatggtttcaaattg |
14430091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 44183981 - 44184018
Alignment:
| Q |
239 |
tggtgtttcatattgaagctaacatgaatttgtattta |
276 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
44183981 |
tggtgtttcagattgaagctaacctgaatttgtattta |
44184018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 30663628 - 30663692
Alignment:
| Q |
212 |
tttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta |
276 |
Q |
| |
|
||||| ||| |||| ||||||||||| |||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
30663628 |
tttttttttaattttgaggatgctttttggtgttttagattgaagctaacttgaatttgtattta |
30663692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 22855165 - 22855101
Alignment:
| Q |
212 |
tttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta |
276 |
Q |
| |
|
||||||||| |||| |||||| |||| |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
22855165 |
tttttattttattttgaggatactttttggtgtttcagattgaagctaaccagaatttgtattta |
22855101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 14135989 - 14135941
Alignment:
| Q |
228 |
aggatgctttctggtgtttcatattgaagctaacatgaatttgtattta |
276 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
14135989 |
aggatgctttttggtgtttcaaatttaagctaacctgaatttgtattta |
14135941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 35336658 - 35336713
Alignment:
| Q |
222 |
atttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtatttaa |
277 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
35336658 |
attttgaggatgctttttggtgtttcaaattgaagctaatttgaatttgtatttaa |
35336713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 34126409 - 34126347
Alignment:
| Q |
214 |
tttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta |
276 |
Q |
| |
|
||||||| |||| ||| ||||| | |||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
34126409 |
tttattttattttgagaatgctatttggtgttttaaattgaaggtaacatgaatttgtattta |
34126347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 2297330 - 2297384
Alignment:
| Q |
222 |
atttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta |
276 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
2297330 |
attttgaggatgctttttggtgtttcagattaaagctaatttgaatttgtattta |
2297384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 40418472 - 40418432
Alignment:
| Q |
241 |
gtgtttcatattgaagctaacatgaatttgtatttaacttt |
281 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
40418472 |
gtgtttcagattgaagctagcttgaatttgtatttaacttt |
40418432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University