View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13736_low_5 (Length: 595)
Name: NF13736_low_5
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 11 - 576
Target Start/End: Complemental strand, 39586830 - 39586265
Alignment:
| Q |
11 |
cacagataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586830 |
cacaaataatagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaat |
39586731 |
T |
|
| Q |
111 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586730 |
gttgttgcaaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgc |
39586631 |
T |
|
| Q |
211 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586630 |
tttcaactccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacac |
39586531 |
T |
|
| Q |
311 |
ggaagaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatgga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586530 |
ggaagaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatgga |
39586431 |
T |
|
| Q |
411 |
ccgacatttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586430 |
ccgacatttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtg |
39586331 |
T |
|
| Q |
511 |
gtgatgcgggctatgttatgccaatgcctagtcctaaaaggaatggtgattggttgctctacatga |
576 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586330 |
gtgatgcgggctacgttatgccaatgcctagtcctaaaaggaatggtgattggttgctctacatga |
39586265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 36 - 575
Target Start/End: Complemental strand, 39543679 - 39543140
Alignment:
| Q |
36 |
cgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtgg |
135 |
Q |
| |
|
||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
39543679 |
cgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtgg |
39543580 |
T |
|
| Q |
136 |
ttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagatt |
235 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || ||||||| |
|
|
| T |
39543579 |
ttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatt |
39543480 |
T |
|
| Q |
236 |
aatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggactaatt |
335 |
Q |
| |
|
| |||||| || ||||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| |||||| |
|
|
| T |
39543479 |
agcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaatt |
39543380 |
T |
|
| Q |
336 |
gattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatttgtggtgtcttctgggc |
435 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||||| ||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
39543379 |
gattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaacatttgtggtatcttcagggc |
39543280 |
T |
|
| Q |
436 |
aaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcgggctatgttatgccaat |
535 |
Q |
| |
|
| |||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||| || ||| ||| ||||||||||||||||| |
|
|
| T |
39543279 |
agaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgctggctatgttatgccaat |
39543180 |
T |
|
| Q |
536 |
gcctagtcctaaaaggaatggtgattggttgctctacatg |
575 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
39543179 |
gccaagccctaaaaggaatggtgattggttgctctacatg |
39543140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 33 - 575
Target Start/End: Complemental strand, 39553701 - 39553159
Alignment:
| Q |
33 |
aagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
132 |
Q |
| |
|
|||||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
39553701 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
39553602 |
T |
|
| Q |
133 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
232 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || |||| |
|
|
| T |
39553601 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
39553502 |
T |
|
| Q |
233 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggacta |
332 |
Q |
| |
|
|||| |||||| || ||||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| ||| |
|
|
| T |
39553501 |
attagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtcta |
39553402 |
T |
|
| Q |
333 |
attgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatttgtggtgtcttctg |
432 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||||| ||| ||||| |||||||| || ||||| | |
|
|
| T |
39553401 |
attgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaacatttgttgtatcttcag |
39553302 |
T |
|
| Q |
433 |
ggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcgggctatgttatgcc |
532 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||| || ||| ||| |||||||||||||| |
|
|
| T |
39553301 |
ggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgctggctatgttatgcc |
39553202 |
T |
|
| Q |
533 |
aatgcctagtcctaaaaggaatggtgattggttgctctacatg |
575 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
39553201 |
aatgccaagccctaaaaggaatggtgattggttgctctacatg |
39553159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 17503231 - 17503163
Alignment:
| Q |
315 |
gaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttat |
383 |
Q |
| |
|
||||||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| |
|
|
| T |
17503231 |
gaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat |
17503163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University