View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13736_low_7 (Length: 446)
Name: NF13736_low_7
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13736_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 30982914 - 30983330
Alignment:
| Q |
14 |
taattctcacatcacaacaaacacaacctcatataatgttacccttacggattctcaaatctctcatgttttttccatataaaattctaagatctttctc |
113 |
Q |
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| T |
30982914 |
taattctcacatcacaacaaacacaacctcatataatgttacccttacggattctcaaatctctcatgttttttccatataaaattctaagatctttctc |
30983013 |
T |
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| Q |
114 |
atactttgactaattttttgcacttacttttaccactctttcacgttaatttttctcttcctctcttttgtatcctctactataaggaggttaaaaatta |
213 |
Q |
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| T |
30983014 |
atactttgactaattttttgcacttacttttaccactctttcacgttaatttttctcttcctctcttttgtatcctctactataaggaggttaaaaatta |
30983113 |
T |
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| Q |
214 |
atcaagctattcgtgaactatttttcactctaacgttaaatatatgttagattaaataaacgagctaaagtttatgattgaatcaaattaattaaatgag |
313 |
Q |
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| T |
30983114 |
atcaagctattcgtgaactatttttcactctaacgttaaatatatgttagattaaataaacgagctaaagtttatgattgaatcaaattaattaaatgag |
30983213 |
T |
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| Q |
314 |
tcaaattcaaactttatagactcaactcaaagttatatcaataacttgtgtgcatatataacatacacaagtgtcaaagtttattttgatatcaaacatt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30983214 |
tcaaattcaaactttatagactcaactcaaagttatatcaataacttgtgtgcatatataacatacacaagtgtcaaagtttattttgacatcaaacatt |
30983313 |
T |
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| Q |
414 |
atccgttgatttcattt |
430 |
Q |
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| T |
30983314 |
atccgttgatttcattt |
30983330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 31016492 - 31016558
Alignment:
| Q |
37 |
caacctcatataatgttaccct-tac-ggattctcaaatctctcatgttttttccatataaaattct |
101 |
Q |
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|||| ||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||| |
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| T |
31016492 |
caacttcatataatgttaccctctattggattctcaaacatctcatgtttttgccatataaaattct |
31016558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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