View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13736_low_8 (Length: 439)

Name: NF13736_low_8
Description: NF13736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13736_low_8
NF13736_low_8
[»] chr1 (3 HSPs)
chr1 (15-439)||(18190163-18190582)
chr1 (387-439)||(398828-398880)
chr1 (387-439)||(10577798-10577850)
[»] chr7 (3 HSPs)
chr7 (182-264)||(12025740-12025821)
chr7 (387-439)||(9778452-9778504)
chr7 (346-386)||(12025878-12025918)
[»] scaffold0504 (1 HSPs)
scaffold0504 (154-253)||(8922-9018)
[»] scaffold0053 (1 HSPs)
scaffold0053 (387-439)||(8742-8794)
[»] chr4 (8 HSPs)
chr4 (386-439)||(24613774-24613827)
chr4 (384-439)||(36635265-36635320)
chr4 (398-439)||(847906-847947)
chr4 (386-439)||(4157101-4157154)
chr4 (398-439)||(20521912-20521953)
chr4 (398-439)||(35158048-35158089)
chr4 (387-439)||(20633429-20633481)
chr4 (399-439)||(23293049-23293089)
[»] chr8 (9 HSPs)
chr8 (387-439)||(29510367-29510419)
chr8 (385-439)||(29447183-29447237)
chr8 (386-438)||(24413624-24413676)
chr8 (388-439)||(926851-926902)
chr8 (398-439)||(22651931-22651972)
chr8 (386-439)||(43737876-43737929)
chr8 (387-439)||(2572119-2572171)
chr8 (399-439)||(18964127-18964167)
chr8 (384-436)||(29357917-29357969)
[»] chr5 (9 HSPs)
chr5 (387-439)||(21522694-21522746)
chr5 (387-439)||(21533260-21533312)
chr5 (387-439)||(6326360-6326412)
chr5 (387-439)||(15382421-15382473)
chr5 (387-439)||(15410511-15410563)
chr5 (387-439)||(36642825-36642876)
chr5 (398-439)||(13287462-13287503)
chr5 (386-439)||(23016054-23016107)
chr5 (387-439)||(24906364-24906416)
[»] scaffold0021 (1 HSPs)
scaffold0021 (387-438)||(130426-130477)
[»] chr6 (8 HSPs)
chr6 (388-439)||(16766642-16766693)
chr6 (385-439)||(426577-426631)
chr6 (385-439)||(8777036-8777090)
chr6 (387-439)||(7938060-7938112)
chr6 (384-438)||(10294048-10294102)
chr6 (386-439)||(9027121-9027174)
chr6 (398-439)||(28715258-28715299)
chr6 (387-439)||(9107433-9107485)
[»] chr3 (9 HSPs)
chr3 (386-439)||(10335349-10335402)
chr3 (387-439)||(14027959-14028011)
chr3 (387-434)||(750687-750734)
chr3 (387-438)||(35994801-35994852)
chr3 (387-433)||(21479068-21479114)
chr3 (386-439)||(10318103-10318156)
chr3 (387-439)||(4991030-4991082)
chr3 (387-439)||(15796357-15796409)
chr3 (387-439)||(24205104-24205156)
[»] scaffold0007 (1 HSPs)
scaffold0007 (387-439)||(225331-225383)
[»] chr2 (1 HSPs)
chr2 (17-92)||(13108025-13108100)
[»] scaffold0116 (1 HSPs)
scaffold0116 (387-439)||(9842-9894)
[»] scaffold0027 (1 HSPs)
scaffold0027 (387-439)||(46626-46678)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 18190582 - 18190163
Alignment:
Q  15 atactttgataaccaaaatatgtcatcaatttaacgcataactgcaacaccttctgctgctaacttaatcactgtttcttcaccaggctcgcattacgaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   | |||  |||||||| |||||||| ||||||||||  |||||||||||||    
T  18190582 atactttgataaccaaaatatgtcatcaatttaacgcataactgcaa---cgtcttgtgctaactcaatcactgcttcttcaccaatctcgcattacgaa 18190486  T
Q  115 atgaagaagtggaggaagaagctttctagaagagataaattgggaaagctaccttatgttgttgaggatccatccttcttctgttgagttaccatcctac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| || ||    
T  18190485 atgaagaagtggaggaagaagctttctagaagagataaattgggaaagctacctta---tgttgaggatccatccttcttctgttgagttaccaacccac 18190389  T
Q  215 ccactctgtaaagcctttccagatacttttactaaacccattaaaaattaagactaccagttcaggaacttaatg-ttgtatatgagcaggggtgagaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  18190388 ccactctgtaaagcctttccagatacttttactaaacccattaaaaattaagactaccagttcaggaacttaatgtttgtatatgagtaggggtgagaat 18190289  T
Q  314 ttacacaaatacacaagtcatggtccctcctgagacttgtgtgtttggagcattatgccttatactgaccaatctatgaaacatggatacggacatgggc 413  Q
    ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  18190288 ttagacaaatgcacaagtcatggttcctcctgagacttgtgtgtttggagcattatgccttatactgaccaatctatgaagcatggatacggacatggac 18190189  T
Q  414 accggacacgacacggacactgacac 439  Q
    ||||||||||||||||| ||||||||    
T  18190188 accggacacgacacggatactgacac 18190163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 398880 - 398828
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||  || |||||||||||||||||||||||||||    
T  398880 ctatgaagcacggatacggacgcggacaccggacacgacacggacactgacac 398828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 10577850 - 10577798
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || ||||||||||||||||||||| |||||    
T  10577850 ctatgaagcacggatacggacacggacaccggacacgacacggacaccgacac 10577798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 12025740 - 12025821
Alignment:
Q  182 atccatccttcttctgttgagttaccatcctacccactctgtaaagcctttccagatacttttactaaacccattaaaaatta 264  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||    
T  12025740 atccatccttctt-tgttgagttaccaacctacccactttgtaaagcttttccagatacttataccaaacccattaaaaatta 12025821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 9778452 - 9778504
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || |||||||||||||||||||||||||||    
T  9778452 ctatgaagcacggatacggacacggacaccggacacgacacggacactgacac 9778504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 12025878 - 12025918
Alignment:
Q  346 agacttgtgtgtttggagcattatgccttatactgaccaat 386  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  12025878 agacttgtgtgtttggagcattatgccttatactcaccaat 12025918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 9018 - 8922
Alignment:
Q  154 ttgggaaagctaccttatgttgttgaggatccatccttcttctgttgagttaccatcctacccactctgtaaagcctttccagatacttttactaaaccc 253  Q
    ||||||||||||| |||||| | |||   ||||||||||||||||||| |||||| |||||||| | |||||||| |||||| ||||||||||| |||||    
T  9018 ttgggaaagctactttatgtggatga---tccatccttcttctgttgacttaccaacctacccattttgtaaagcatttccaaatacttttacttaaccc 8922  T

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Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 8742 - 8794
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||||||||    
T  8742 ctatgaagcatggatacggacacggacaccggacacgacacggacactgacac 8794  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 24613827 - 24613774
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||| ||||||||||||||||| ||| |||||||||||| ||||||||||    
T  24613827 tctatgaagcatggatacggacatggacactggacacgacacgaacactgacac 24613774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 36635265 - 36635320
Alignment:
Q  384 aatctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||| |||||||| |||||  | ||||||||||||| |||||||||||||    
T  36635265 aatctatgaagcatggataaggacacagacaccggacacgactcggacactgacac 36635320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 847906 - 847947
Alignment:
Q  398 ggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||||||| | ||||||||||||| |||||||||||    
T  847906 ggatacggacatggaccccggacacgacacagacactgacac 847947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 4157101 - 4157154
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||| || ||||||||||| || |||| |||||||||| |||||||||||    
T  4157101 tctatgaagcacggatacggacacggacaccagacacgacacagacactgacac 4157154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 20521953 - 20521912
Alignment:
Q  398 ggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| |||||| |||| ||||||||||||||||||||||    
T  20521953 ggatacgtacatggacaccagacacgacacggacactgacac 20521912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 35158089 - 35158048
Alignment:
Q  398 ggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||||||| || |||||||||| ||||||||||||||||    
T  35158089 ggatacggacacggacaccggacacaacacggacactgacac 35158048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 20633429 - 20633481
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || |||| ||||||| ||||||||||||||    
T  20633429 ctatgaagcacggatacggacacggacaccagacacgatacggacactgacac 20633481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 23293089 - 23293049
Alignment:
Q  399 gatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||| || |||||||||||||||||||| ||||||    
T  23293089 gatacggacacggacaccggacacgacacggacaatgacac 23293049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 29510419 - 29510367
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||||    
T  29510419 ctatgaagcacggatactgacatggacaccggacacgacacggacactgacac 29510367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 29447237 - 29447183
Alignment:
Q  385 atctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||||| ||| ||||||||||||| ||| ||||||||||||||||| |||||    
T  29447237 atctatgaagcatagatacggacatggacactggacacgacacggacaccgacac 29447183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 24413676 - 24413624
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgaca 438  Q
    |||||||| || ||||||||||| || |||| |||||||||||||||||||||    
T  24413676 tctatgaagcacggatacggacacggacaccagacacgacacggacactgaca 24413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 926902 - 926851
Alignment:
Q  388 tatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||| || ||||||| ||| || |||||||||||||||||||||||||||    
T  926902 tatgaagcacggatacgaacacggacaccggacacgacacggacactgacac 926851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 22651931 - 22651972
Alignment:
Q  398 ggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||||  | |||||||||||||||||||||||||||    
T  22651931 ggatacggacactgacaccggacacgacacggacactgacac 22651972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 43737929 - 43737876
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||| || |||||| |||| || ||||||||||||||||||||| |||||    
T  43737929 tctatgaagcacggatacagacacggacaccggacacgacacggacaccgacac 43737876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 2572171 - 2572119
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| |||||||||||||| || ||| |||||||||||||| || |||||    
T  2572171 ctatgaagcatggatacggacacggacactggacacgacacggataccgacac 2572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 18964127 - 18964167
Alignment:
Q  399 gatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||| || |||| ||||||||||||||||||||||    
T  18964127 gatacggacacggacaccagacacgacacggacactgacac 18964167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 29357917 - 29357969
Alignment:
Q  384 aatctatgaaacatggatacggacatgggcaccggacacgacacggacactga 436  Q
    ||||||||||||| |||||  ||||||| ||||||||||||||  ||||||||    
T  29357917 aatctatgaaacaaggatatagacatggacaccggacacgacatagacactga 29357969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 21522694 - 21522746
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || |||||||||||||||||||||||||||    
T  21522694 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgacac 21522746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 21533260 - 21533312
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || |||||||||||||||||||||||||||    
T  21533260 ctatgaagcacggatacggacacggtcaccggacacgacacggacactgacac 21533312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 6326412 - 6326360
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| |||||||| ||||| ||  ||||||||||||||||||||||||||    
T  6326412 ctatgaagcatggataaggacacggataccggacacgacacggacactgacac 6326360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 15382421 - 15382473
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || |||||||||||||||||||| ||||||    
T  15382421 ctatgaagcacggatacggacacggacaccggacacgacacggacaatgacac 15382473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 15410563 - 15410511
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||| |||||||||| ||| || | ||||||||||||||||||||||    
T  15410563 ctatgaaacacggatacggacgtggacatcagacacgacacggacactgacac 15410511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 36642876 - 36642825
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| |||||||||||||| |  |||||||||||||||||||||||||||    
T  36642876 ctatgaagcatggatacggacaaga-caccggacacgacacggacactgacac 36642825  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 13287503 - 13287462
Alignment:
Q  398 ggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||||||| || |||||||||||||||||||||| ||||    
T  13287503 ggatacggacacggacaccggacacgacacggacactaacac 13287462  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 23016107 - 23016054
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||| || ||||||||||| || | ||||||||||||||||||| |||||    
T  23016107 tctatgaagcacggatacggacacggactccggacacgacacggacaccgacac 23016054  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 24906416 - 24906364
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||||||  ||||| |||| | ||||||||||||||||| ||||||||||    
T  24906416 ctatgaaacaccgatacagacacgagcaccggacacgacacgaacactgacac 24906364  T

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Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 130426 - 130477
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgaca 438  Q
    ||||||| |||||||||||||| || |||||||||||||||||||| |||||    
T  130426 ctatgaagcatggatacggacacggacaccggacacgacacggacaatgaca 130477  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 439
Target Start/End: Original strand, 16766642 - 16766693
Alignment:
Q  388 tatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||||||||    
T  16766642 tatgaagcatggatacggacacggacaccggacacgacatggacactgacac 16766693  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 426631 - 426577
Alignment:
Q  385 atctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||||| ||||||||| |||| ||  ||||||||||||||||||||||||||    
T  426631 atctatgaagcatggatacagacacggataccggacacgacacggacactgacac 426577  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 8777090 - 8777036
Alignment:
Q  385 atctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||||| || ||||||||||| || || ||||||||||||||||||||||||    
T  8777090 atctatgaagcacggatacggacacggacaacggacacgacacggacactgacac 8777036  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 7938060 - 7938112
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || |||||||||||||| ||||||||||||    
T  7938060 ctatgaagcacggatacggacacggacaccggacacgacatggacactgacac 7938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 10294048 - 10294102
Alignment:
Q  384 aatctatgaaacatggatacggacatgggcaccggacacgacacggacactgaca 438  Q
    |||||||||| || ||||||||||| |  |||||||||||||||||| |||||||    
T  10294048 aatctatgaagcacggatacggacacgaacaccggacacgacacggatactgaca 10294102  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 9027121 - 9027174
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||| ||  |||||||||| || | |||||||||||||||||||||||||    
T  9027121 tctatgaagcaccgatacggacacggactccggacacgacacggacactgacac 9027174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 28715258 - 28715299
Alignment:
Q  398 ggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||||||| || |||||||||||| ||||||||||||||    
T  28715258 ggatacggacacggacaccggacacgatacggacactgacac 28715299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 9107485 - 9107433
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || |||||| |||| || |||||||||||||||||||||| ||||    
T  9107485 ctatgaagcacggatactgacacggacaccggacacgacacggacactaacac 9107433  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 10335402 - 10335349
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||| || ||||||| ||| || |||||||||||||||||||||||||||    
T  10335402 tctatgaagcacggatacgaacacggacaccggacacgacacggacactgacac 10335349  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 14027959 - 14028011
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || ||||||||||||||||||||| |||||    
T  14027959 ctatgaagcacggatacggacacggacaccggacacgacacggacaccgacac 14028011  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 750734 - 750687
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacact 434  Q
    ||||||| || ||||||||||| || ||||||||||||||||||||||    
T  750734 ctatgaagcacggatacggacacggacaccggacacgacacggacact 750687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 35994852 - 35994801
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgaca 438  Q
    ||||||| || |||||||||||||| |||||||||||||| ||||| |||||    
T  35994852 ctatgaagcacggatacggacatggacaccggacacgacatggacaatgaca 35994801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 433
Target Start/End: Original strand, 21479068 - 21479114
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacac 433  Q
    ||||||| |||||||||||||| || ||||||||||||||| |||||    
T  21479068 ctatgaagcatggatacggacacggacaccggacacgacactgacac 21479114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 10318156 - 10318103
Alignment:
Q  386 tctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||| || ||||||| ||| || ||||||||||||||||||||| |||||    
T  10318156 tctatgaagcacggatacgaacacggacaccggacacgacacggacacggacac 10318103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 4991082 - 4991030
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||| | ||||||||| || ||||| |||||||||||| ||||||||    
T  4991082 ctatgaaacacgtatacggacacggacaccgaacacgacacggagactgacac 4991030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 15796409 - 15796357
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||| ||||| || |||||||||||||||||||| ||||||    
T  15796409 ctatgaagcacggatatggacacggacaccggacacgacacggacaatgacac 15796357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 24205156 - 24205104
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||| || |||| || |||||||||||||||||||||||||||    
T  24205156 ctatgaagcacggacacagacacggacaccggacacgacacggacactgacac 24205104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 225383 - 225331
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    |||||||||| ||| || |||| || |||||||||||||||||||||||||||    
T  225383 ctatgaaacacggacacagacacggacaccggacacgacacggacactgacac 225331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 13108025 - 13108100
Alignment:
Q  17 actttgataaccaaaatatgtcatcaatttaacgcataactgcaacaccttctgctgctaacttaatcactgtttc 92  Q
    |||||||||||   |||||||||||||||| | |||||||  |||||||||||  |||||||||| ||| ||||||    
T  13108025 actttgataacttgaatatgtcatcaatttcatgcataacaacaacaccttcttgtgctaacttagtcattgtttc 13108100  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 9842 - 9894
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || |||||||||||||| |||||| |||||    
T  9842 ctatgaagcacggatacggacacggacaccggacacgacatggacaccgacac 9894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 46626 - 46678
Alignment:
Q  387 ctatgaaacatggatacggacatgggcaccggacacgacacggacactgacac 439  Q
    ||||||| || ||||||||||| || || ||||||||||||||||| ||||||    
T  46626 ctatgaagcacggatacggacacggacatcggacacgacacggacaatgacac 46678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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