View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13737_high_3 (Length: 417)
Name: NF13737_high_3
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 44 - 352
Target Start/End: Original strand, 44583404 - 44583709
Alignment:
| Q |
44 |
attcattacctgcttctcaccatcatcatcattaagcaagaaaagagagaagaatgtgtaattccacacaacacacgatcagcaacatcctaagaaaaac |
143 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44583404 |
attcattacctgcttctcaccgtcgtcat---taagcaagaaaagagagaagaatgagtaattccacacaacacacgatcagcaaaatcctaagaaaaac |
44583500 |
T |
|
| Q |
144 |
cccaaacaaaacactttcagtttcaacaagacaagcaaaacaactacacgcacacatcgtaaaaacaaaaggaacattgcactccgacaacatcctcgta |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44583501 |
cccaaacaaaacactttcagtttcaacaagacaagcaaaacaactacacgcacacatcgtaaaaacaaaaggaacattgcactccgacaacatcctcgta |
44583600 |
T |
|
| Q |
244 |
ctctcactctactcaaatctcaacctcttacaacattccctccacctcttcaactcccttccttctcctccaccacctctcgcatggtcttctataatca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44583601 |
ctctcactctactcaaatctcaacctcttacaacattccctccacctcttcaactcccttccttctcctccaccacctctcgcatggtcttctataatca |
44583700 |
T |
|
| Q |
344 |
aatgctaca |
352 |
Q |
| |
|
||||||||| |
|
|
| T |
44583701 |
aatgctaca |
44583709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University