View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13737_high_4 (Length: 328)
Name: NF13737_high_4
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 14010574 - 14010885
Alignment:
| Q |
1 |
ttatgcatatgtcttcaacttctctattaacaaacttaggatttatacacacagtgcaagtttttgtttaaatactacaatccaatttacagtatatgcg |
100 |
Q |
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| T |
14010574 |
ttatgcatacgtcttcaacttctctattaacaaacttaggatttatacacacagtgcaagtttttgtttaaatactacaatccaatttacagtatatgcg |
14010673 |
T |
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| Q |
101 |
acctgccaatatattttaatcatataaaacatatcactgtattgtcaaatttgttccacttagaactttgcttcaataggtcttaaaagtgaaacaacat |
200 |
Q |
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| T |
14010674 |
acctgccaatatattttaatcatataaaacatatcactgtattgtcaaatttgttccacttagaacattgcttcaataggtcttaaaagtgaaacaacat |
14010773 |
T |
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| Q |
201 |
ttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttcatgtgagcttccattga |
300 |
Q |
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| T |
14010774 |
ttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttcatgtgagcttccattga |
14010873 |
T |
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| Q |
301 |
caacatgaaatg |
312 |
Q |
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| T |
14010874 |
caacatgaaatg |
14010885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 86 - 312
Target Start/End: Complemental strand, 3883308 - 3883082
Alignment:
| Q |
86 |
tttacagtatatgcgacctgccaatatattttaatcatataaaacatatcactgtattgtcaaatttgttccacttagaactttgcttcaataggtctta |
185 |
Q |
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| T |
3883308 |
tttacagtatatgcgacctgccaatatattttaatcatataaaacatatccctgtattgtcaaatttgttccactttgaactttgcttcaataggtctta |
3883209 |
T |
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| Q |
186 |
aaagtgaaacaacatttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttcat |
285 |
Q |
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| T |
3883208 |
aaagtgaaacaacatttctattgtttgatgtattgccagcttaaagttgaaaaagtcatgacatcttaaattacttgcatttccaacttgtttcgttcat |
3883109 |
T |
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| Q |
286 |
gtgagcttccattgacaacatgaaatg |
312 |
Q |
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| T |
3883108 |
gtgagcttccattgacaacatgaaatg |
3883082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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