View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13737_high_5 (Length: 312)
Name: NF13737_high_5
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 116 - 288
Target Start/End: Complemental strand, 42470499 - 42470327
Alignment:
| Q |
116 |
tcacatactatattttattaaccatagaataaaggtacatttcttccacacgtaacaatataatgagaacgtgactcatttttcctatgtagccgacaca |
215 |
Q |
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| T |
42470499 |
tcacatactatattttattaaccatagaataaaggtacatttcttccacacgtagcaatataatgagaacgtgactcatttttcctatgtagccgacaca |
42470400 |
T |
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| Q |
216 |
ccattacattggtcctaacaccaacgttacatgcacatgcacttccataaaaaattcaactattatataatta |
288 |
Q |
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| T |
42470399 |
ccattacattggtcctaacaccaacgttacatgcacatgcacttccataaaaaattcaactattatataatta |
42470327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 42470617 - 42470509
Alignment:
| Q |
26 |
tgttgaccaaaccattaattaagttattcttaataagatggtttcctacaccagcaatgaccaaactagagatatcaagagaaacaaacatcacatacta |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42470617 |
tgttgaccaaaccattaattaagttattcttaataagatggtttcctacaccagcaatgaccaaactagagatataaagagaaacaaacatcacatactg |
42470518 |
T |
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| Q |
126 |
tattttatt |
134 |
Q |
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||||||||| |
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| T |
42470517 |
tattttatt |
42470509 |
T |
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