View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13737_high_7 (Length: 215)
Name: NF13737_high_7
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 22121575 - 22121762
Alignment:
| Q |
11 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121575 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
22121674 |
T |
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| Q |
111 |
cctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccag |
198 |
Q |
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| T |
22121675 |
cctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccag |
22121762 |
T |
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Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 40512898 - 40512711
Alignment:
| Q |
11 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512898 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
40512799 |
T |
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| Q |
111 |
cctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccag |
198 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512798 |
cctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccag |
40512711 |
T |
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