View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13737_low_1 (Length: 1085)
Name: NF13737_low_1
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 24 - 706
Target Start/End: Complemental strand, 3367692 - 3367001
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttagaaaagaggactggt |
123 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3367692 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagaggactggt |
3367593 |
T |
|
| Q |
124 |
tggtagaagtagaactttttgtaaaaacatatgtttatttacttatttatagatttctcaactggaattatgatgcctaaggaagctatttgttcctaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3367592 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttctcaattgggattatgatgcctaaggaagctatttgttcctaaa |
3367493 |
T |
|
| Q |
224 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtttttgaattatttggctctgttt |
323 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3367492 |
ttatgttttgccttttgagactattgtgttttgttgtttaccatttaatctaccatatttggtggcttaatctttgtttttgaattatttggttctgttt |
3367393 |
T |
|
| Q |
324 |
gcagatctgccaataacttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctaaggtataaacttcctctttgattggttttaaaatg |
423 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
3367392 |
gcagatctgccaatgacttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatg |
3367293 |
T |
|
| Q |
424 |
attccttttactatgtgcatagtccaatgctcatctttctttccaagtttt---------ttgcaaatgttaatgttcaattgtcatgaagtgattgata |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3367292 |
attccttttactatgtgcatggtccaatgctcatctttctttccaagttttttacaaatattgcaaatgttaatgttccattgtcatgaagtgattgata |
3367193 |
T |
|
| Q |
515 |
aaacaattcaatttcaatctcacagtcttggtgtcactaagccagtgaaatgagatactgcattctttgtgactcaatgcttgtctaagttctttctgcc |
614 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
3367192 |
aaacagttcaatttcaatctcacagtcttggtgtcgctaagccagtgaaatgagatactgcattctttgtgaatcaatgcttgtctgagtcctttctgcc |
3367093 |
T |
|
| Q |
615 |
agggacttgttatgtagcctagagctaccattcttcccttccttagactacaactgtcatgacatttttctctccctcccttagttcattaa |
706 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3367092 |
agggacttgttttgtagcctagaggtaccattcttcccttccttagactacaactgtcatgacaattttctctccctcccttagttcattaa |
3367001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 22884134 - 22884213
Alignment:
| Q |
29 |
tattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgact---gtgttttgcaattgtgtgcttat |
105 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
22884134 |
tattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctattattttgcaattgtgtgcttat |
22884213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 7710917 - 7710971
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaattt |
78 |
Q |
| |
|
|||||||| |||||| ||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
7710917 |
caaggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaaattt |
7710971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 24 - 706
Target Start/End: Complemental strand, 54188604 - 54187913
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttagaaaagaggactggt |
123 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
54188604 |
caaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagatgactggt |
54188505 |
T |
|
| Q |
124 |
tggtagaagtagaactttttgtaaaaacatatgtttatttacttatttatagatttctcaactggaattatgatgcctaaggaagctatttgttcctaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54188504 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttttcaattgggattatgatgcctaaggaagctatttgttcctaaa |
54188405 |
T |
|
| Q |
224 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtttttgaattatttggctctgttt |
323 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54188404 |
ttatgttttgctttttgagactattgtgttttgttgtttaccatttaatctaccatatttggtggcttaatctttgtttttgaattatttggttctgttt |
54188305 |
T |
|
| Q |
324 |
gcagatctgccaataacttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctaaggtataaacttcctctttgattggttttaaaatg |
423 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
54188304 |
gcagatctgccaatgactttaagtgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatg |
54188205 |
T |
|
| Q |
424 |
attccttttactatgtgcatagtccaatgctcatctttctttccaagtttt---------ttgcaaatgttaatgttcaattgtcatgaagtgattgata |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54188204 |
attccttttactatgtgcatggtccaatgctcatctttctttccaagttttttacaaatattgcaaatgttaatgttccattgtcatgaagtgattgata |
54188105 |
T |
|
| Q |
515 |
aaacaattcaatttcaatctcacagtcttggtgtcactaagccagtgaaatgagatactgcattctttgtgactcaatgcttgtctaagttctttctgcc |
614 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
54188104 |
aaacagttcaatttcaatctcacagtcttggtgtcgctaagccagtgaaatgagatactgcattctttgtgaatcaatgcttgtctgagtcctttctgcc |
54188005 |
T |
|
| Q |
615 |
agggacttgttatgtagcctagagctaccattcttcccttccttagactacaactgtcatgacatttttctctccctcccttagttcattaa |
706 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54188004 |
agggacttgttttgtagcctagaggtaccattcttcccttccttagactacaactgtcatgacatttttctctccctcccttagttcattaa |
54187913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 24 - 706
Target Start/End: Original strand, 8570574 - 8571253
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttagaaaagaggactggt |
123 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8570574 |
caaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttatttaggaaagaggactgga |
8570673 |
T |
|
| Q |
124 |
tggtagaagtagaactttttgtaaaaacatatgtttatttacttatttatagatttctcaactggaattatgatgcctaaggaagctatttgttcctaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8570674 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttctcaattgggattatgatgcctaaggaagctatttgttcctaaa |
8570773 |
T |
|
| Q |
224 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtttttgaattatttggctctgttt |
323 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
8570774 |
ttatgttttgccttttgagactattgtgttttgttgtttaccatttaatctaccatattaggtggcttaatctttgtttttgaatta----------ttt |
8570863 |
T |
|
| Q |
324 |
gcagatctgccaataacttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctaaggtataaacttcctctttgattggttttaaaatg |
423 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
8570864 |
gcagatctgccaatgacttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatg |
8570963 |
T |
|
| Q |
424 |
attccttttactatgtgcatagtccaatgctcatctttctttccaagtt---------ttttgcaaatgttaatgttcaattgtcatgaagtgattgata |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8570964 |
attccttttactatgtgcatggtccaatgctcatctttctttccaagttatttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgata |
8571063 |
T |
|
| Q |
515 |
aaacaattcaatttcaatctcacagtcttggtgtcactaagccagtgaaatgagatactgcattctttgtgactcaatgcttgtctaagttctttctgcc |
614 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| |
|
|
| T |
8571064 |
aaacagttcaatttcaatct--cagtcttggtgtcgctaagccaatgaaatgagatactgcattctttgtgaatcaatgcttgtttgagtcctttctgcc |
8571161 |
T |
|
| Q |
615 |
agggacttgttatgtagcctagagctaccattcttcccttccttagactacaactgtcatgacatttttctctccctcccttagttcattaa |
706 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8571162 |
agggacttgttttgtagcctagaggtaccattcttcccttccttagactacaactgtcatgacatttttctctccctcccttagttcattaa |
8571253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 2550303 - 2550261
Alignment:
| Q |
48 |
aggtgtttgataatttgactcaatgaaatttgactgtgttttg |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
2550303 |
aggtgtttgataatttgactcaatgaaatttaactttgttttg |
2550261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 28462519 - 28462446
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt |
97 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
28462519 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt |
28462446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 5992046 - 5992093
Alignment:
| Q |
340 |
cttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatct |
387 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
5992046 |
cttcaagtgtgattgatggcttgcaccaagatcggagcagtagcatct |
5992093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 24 - 706
Target Start/End: Original strand, 28696534 - 28697213
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttagaaaagaggactggt |
123 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28696534 |
caaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttatttaggaaagaggactggt |
28696633 |
T |
|
| Q |
124 |
tggtagaagtagaactttttgtaaaaacatatgtttatttacttatttatagatttctcaactggaattatgatgcctaaggaagctatttgttcctaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28696634 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttctcaattgggattatgatgcctaaggaagctatttgttcctaaa |
28696733 |
T |
|
| Q |
224 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtttttgaattatttggctctgttt |
323 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
28696734 |
ttatgttttgccttttgagactattgtgttttgttgtttaccatttaatctaccatattaggtggcttaatctttgtttttgaatta----------ttt |
28696823 |
T |
|
| Q |
324 |
gcagatctgccaataacttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctaaggtataaacttcctctttgattggttttaaaatg |
423 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
28696824 |
gcagatctgccaatgacttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctgaggtataaacttccactttgattggttttaaaatg |
28696923 |
T |
|
| Q |
424 |
attccttttactatgtgcatagtccaatgctcatctttctttccaagtt---------ttttgcaaatgttaatgttcaattgtcatgaagtgattgata |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28696924 |
attccttttactatgtgcatggtccaatgctcatctttctttccaagttatttgcaaatattgcaaatgttaatgttccattgtcatgaagtgattgata |
28697023 |
T |
|
| Q |
515 |
aaacaattcaatttcaatctcacagtcttggtgtcactaagccagtgaaatgagatactgcattctttgtgactcaatgcttgtctaagttctttctgcc |
614 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| |
|
|
| T |
28697024 |
aaacagttcaatttcaatct--cagtcttggtgtcgctaagccaatgaaatgagatactgcattctttgtgaatcaatgcttgtttgagtcctttctgcc |
28697121 |
T |
|
| Q |
615 |
agggacttgttatgtagcctagagctaccattcttcccttccttagactacaactgtcatgacatttttctctccctcccttagttcattaa |
706 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28697122 |
agggacttgttttgtagcctagaggtaccattcttcccttccttagactacaactgtcatgacatttttctctccctcccttagttcattaa |
28697213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 23361689 - 23361760
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaatt |
95 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
23361689 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaatt |
23361760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 378 - 706
Target Start/End: Original strand, 16720019 - 16720356
Alignment:
| Q |
378 |
agtggcatctaaggtataaacttcctctttgattggttttaaaatgattccttttactatgtgcatagtccaatgctcatctttctttccaagttttttg |
477 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16720019 |
agtggcatctgaggtataaacttccactttgattggttttaaaatgattccttttactatgtgcatggtccaatgctcatctttctttccaagttttttg |
16720118 |
T |
|
| Q |
478 |
c---------aaatgttaatgttcaattgtcatgaagtgattgataaaacaattcaatttcaatctcacagtcttggtgtcactaagccagtgaaatgag |
568 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
16720119 |
caaatattgcaaatgttaatgttccattgtcatgaagtgattgataaaacagttcaatttcaatctcatagtcttggtgtcgctaagccagtgaaatgag |
16720218 |
T |
|
| Q |
569 |
atactgcattctttgtgactcaatgcttgtctaagttctttctgccagggacttgttatgtagcctagagctaccattcttcccttccttagactacaac |
668 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16720219 |
atactgcattctttgtgaatcaatgcttgtctgagtcctttctgccagggacttgttttgtagcctagaggtaccattcttcccttccttagactacaac |
16720318 |
T |
|
| Q |
669 |
tgtcatgacatttttctctccctcccttagttcattaa |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16720319 |
tgtcatgacatttttctctccctcccttagttcattaa |
16720356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 7600004 - 7600077
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt |
97 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
7600004 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt |
7600077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 12038212 - 12038167
Alignment:
| Q |
50 |
gtgtttgataatttgactcaatgaaatttgactgtgttttgcaatt |
95 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
12038212 |
gtgtttgatgattttactaaatgaaatttgactctgttttgcaatt |
12038167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 761 - 1068
Target Start/End: Original strand, 19612729 - 19613030
Alignment:
| Q |
761 |
gaaaatgtgtcatttaggcatgtcagagaggctgcacaaagtcttatagttgtaggtaatcctgtggaccctcaaaattattttagtgctattttctgtc |
860 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19612729 |
gaaaatgtgtcatttaggcatgtcagagatgctgcacaaagtcttatag------gcaatcttgtggaccctcaaaattattttagtgctattttctgtc |
19612822 |
T |
|
| Q |
861 |
atttattggaatatgaatctcaaataaatttgtgcccacctatatataatattgttagtttcttatatatggttgttgtttcttacttgataatgttgta |
960 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
19612823 |
atttaatggaatatgaatctcaaataaatttgtgtccacctatatataatattgttagtttcttatctatggttgttgtttcttacttgataatgctgta |
19612922 |
T |
|
| Q |
961 |
gattcatgatctgcatgtaattgggcccagtgatgtcaattgcaaatcacggaaaataagttatttgttcaattttagctatgcaccagtgatatagtgc |
1060 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19612923 |
gattcatgatctgcatgtaattgggcccagtgatgtcaattgcgaatcacggaaaataagttatttgttcaattttagctatgcaccaatgatatagtgc |
19613022 |
T |
|
| Q |
1061 |
tgttataa |
1068 |
Q |
| |
|
|| ||||| |
|
|
| T |
19613023 |
tgctataa |
19613030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 340 - 466
Target Start/End: Original strand, 16450506 - 16450632
Alignment:
| Q |
340 |
cttcaagcgtgattgatggcttgcaccaagatgggaacagtggcatctaaggtataaacttcctctttgattggttttaaaatgattccttttactatgt |
439 |
Q |
| |
|
||||||| | ||||||| ||||||| |||||||| |||||| |||||||||||||| |||||||||||| ||||||| || | ||||||||| | || |
|
|
| T |
16450506 |
cttcaagtgggattgattgcttgcaacaagatggccgcagtggaatctaaggtataaatttcctctttgataggttttaggattactccttttacaacgt |
16450605 |
T |
|
| Q |
440 |
gcatagtccaatgctcatctttctttc |
466 |
Q |
| |
|
|||| || |||||||||||||||||| |
|
|
| T |
16450606 |
gcatgttctaatgctcatctttctttc |
16450632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 19611250 - 19611321
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaatt |
95 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
19611250 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaatt |
19611321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 18391787 - 18391876
Alignment:
| Q |
377 |
cagtggcatctaaggtataaacttcctctttgattggttttaaaatgattccttttactatgtgcatagtccaatgctcatctttctttc |
466 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||| |||||||| || | ||| ||||||| |||||| || ||||||| |||||||||| |
|
|
| T |
18391787 |
cagtggaatctaatgtataaaattcctctttgataggttttaacattactccatttactacgtgcatgttctaatgctcgtctttctttc |
18391876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 7274929 - 7274873
Alignment:
| Q |
57 |
ataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttagaaaa |
113 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
7274929 |
ataatttcactcaataaaatttgactgtgttttacaattgtatgcgtatttagaaaa |
7274873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 23241036 - 23241068
Alignment:
| Q |
50 |
gtgtttgataatttgactcaatgaaatttgact |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
23241036 |
gtgtttgataatttgactcaatgaaatttgact |
23241068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 45402102 - 45402175
Alignment:
| Q |
24 |
caaggtattattgtgctgcttgtcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt |
97 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
45402102 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt |
45402175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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