View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13737_low_2 (Length: 523)
Name: NF13737_low_2
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 4913266 - 4912824
Alignment:
| Q |
1 |
ttcatcatgtattttcgtatgannnnnnnatttgttgattcggatttgccatagcatttgactcagattatgannnnnnnnnctttcgaaaaaatatata |
100 |
Q |
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| T |
4913266 |
ttcatcatgtattttcgtatggtttttttatttgttgattcggatttgccatagcatttgattcaaattatgatttttttt-ctttcgaaaaaaaatata |
4913168 |
T |
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| Q |
101 |
ttaaagaaagatgagatgacataagacatgtttgatacaattcaaaaactataacaaatacatcccaaatcaaggacaagacagagatagaacaagagtc |
200 |
Q |
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| T |
4913167 |
ttaaagaaagatgagatgacataagacatgtttgatacaattcaaaaactataacaaatacatctcaaatcaaggacaagacagagatagaacaagagtc |
4913068 |
T |
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| Q |
201 |
caaaaaccacaaaagtagccgatcgatgaacctcaaacctcctaccaataccaaccaaaatataagaagcttgaatgatcatcaacaatctttgatcgaa |
300 |
Q |
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| T |
4913067 |
caaaaaccacaaaagtagccgatcgatgaacctcaaacctcctaccaataccaaccaaaatataagaagcttcaatgatcatcaacaatctttgatcgaa |
4912968 |
T |
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| Q |
301 |
ccacaccacaaataattaattaggagcttatgcaaaacacaaatgtataaactcccaatctagatagaactcaaacaccactgctatctatgccagtgag |
400 |
Q |
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| T |
4912967 |
ccacaccacaaataattaattaggagcttatgcaaaacaaaaatgtataaactcccaatctagatagaactcaaacaccactgctatctatgccaatgag |
4912868 |
T |
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| Q |
401 |
gtaagaaaatacacatcttagtattattatttcatccaccggat |
444 |
Q |
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| T |
4912867 |
gtaagaaaatacacatcttagtattattatttcatccaccggat |
4912824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 4918477 - 4918415
Alignment:
| Q |
442 |
gatctcaatacagcagcgtgtacgctttttacaagatcattttcggtcaagttgtatcctgtt |
504 |
Q |
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| T |
4918477 |
gatctcaatacagccgcctgtacgctttttacaagatcatttttggtcaagttgtatcctgtt |
4918415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 4912824 - 4912787
Alignment:
| Q |
470 |
ttacaagatcattttcggtcaagttgtatcctgtttct |
507 |
Q |
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| T |
4912824 |
ttacaatatcattttcggtcaagttgtatcctgtttct |
4912787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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