View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13737_low_3 (Length: 456)
Name: NF13737_low_3
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 29032840 - 29032408
Alignment:
| Q |
16 |
aaaatcaccactgttgaacttagtgacatggcggtgttgagatttttgctgcttatgattatggcatggatgaagaaggttttgttcggtggtttcggga |
115 |
Q |
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| T |
29032840 |
aaaatcaccactgttgaacttagtgacatggcggtgttgagatttttgctgcttatgattatggaatggatgaagaaggttttgttcggttgtttcggga |
29032741 |
T |
|
| Q |
116 |
tagaagaaattggttcgagctttggaaccgcgcatggatagagcggcggagtcgtaggcgcaagcagcttgttcggcggtatcgaaagttccgagccagc |
215 |
Q |
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| T |
29032740 |
tagaagaaattggttcgagctttggaaccgcgcatggatagagcggcggagtcgtaggcgcaagcagcttgttcggcggtatcgaaagttccgagccagc |
29032641 |
T |
|
| Q |
216 |
ggcgttctttggaatgtgggtctcttatctcggctgcataacggccccatggtcggcgtcggactccacggtatcgtaccgtggcgcctgttttgttggt |
315 |
Q |
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| T |
29032640 |
ggcgttctttggaatgtgggtctcttatctcggctgcataacggccccatggtcggcgtcggactccacggtatcgtaccgtggcgccagttttgttggt |
29032541 |
T |
|
| Q |
316 |
tgcagaagtggaagaggaagaggaagnnnnnnngtggtagtggtggttttctggttcttccattggaggcattccgttgatagttcttagtgcttgttcc |
415 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29032540 |
tgcagaagtggaagaggaagaggaagtttttttgtggtggtggtggttgtcttgttcttccattggaggcattccgttgagagttcttagtgcttgttcc |
29032441 |
T |
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| Q |
416 |
atggtatggaaagattcaaaataattctgctct |
448 |
Q |
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| T |
29032440 |
atggtatggaaagatttgaaataattatgctct |
29032408 |
T |
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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 14158661 - 14158570
Alignment:
| Q |
197 |
tcgaaagttccgagccagcggcgttctttggaatgtgggtctcttatctcggctgcataacggccccatggtcggcgtcggactccacggta |
288 |
Q |
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||||| ||||| |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||| ||| || ||||| ||||| |
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| T |
14158661 |
tcgaaggttccaagccagcggcgttctttggactgagggtctcttatctcagctgcatagcggccccatggtctgcggcgaactccgcggta |
14158570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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