View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13737_low_5 (Length: 406)
Name: NF13737_low_5
Description: NF13737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13737_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 118 - 396
Target Start/End: Complemental strand, 26833367 - 26833089
Alignment:
| Q |
118 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833367 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
26833268 |
T |
|
| Q |
218 |
cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaannnnnnnncttccatttcggttctcttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
26833267 |
cttgatgattcaactgatcctacaattaaggtatctatgctacaaaactaatgagaacttttgtcaccttaattttttttcttccattttggttctcttg |
26833168 |
T |
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| Q |
318 |
ttacttgttagacacttcagtcatttatatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833167 |
ttacttgttagacacttcagtcatttatatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatc |
26833089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 26786570 - 26786432
Alignment:
| Q |
127 |
atataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgat |
226 |
Q |
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||||| || |||| ||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26786570 |
atatatatggttctaaatgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgat |
26786471 |
T |
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| Q |
227 |
tcaactgatcctacaattaaggtatctatgctacaaaac |
265 |
Q |
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| T |
26786470 |
tcaactgacccaacaatcaaggtatatatgctacaaaac |
26786432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 26823436 - 26823309
Alignment:
| Q |
134 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
233 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
26823436 |
ttgttcatattgcaggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26823337 |
T |
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| Q |
234 |
atcctacaattaaggtatctatgctaca |
261 |
Q |
| |
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| || ||||| ||||||| |||||||| |
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| T |
26823336 |
acccaacaatcaaggtatacatgctaca |
26823309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 26799345 - 26799228
Alignment:
| Q |
134 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
233 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
26799345 |
ttgttcaaattgcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26799246 |
T |
|
| Q |
234 |
atcctacaattaaggtat |
251 |
Q |
| |
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| || || || ||||||| |
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| T |
26799245 |
acccaaccatcaaggtat |
26799228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26833484 - 26833438
Alignment:
| Q |
1 |
ccctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
47 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833484 |
ccctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
26833438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 26799467 - 26799425
Alignment:
| Q |
5 |
atggttcttgttcaagttccaatgtataatgaaagagaggtga |
47 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26799467 |
atggttcttgttcaagttccaatgtacaatgaaagagaggtga |
26799425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 41545969 - 41546059
Alignment:
| Q |
147 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcc |
237 |
Q |
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|||| ||||| ||||||||||| ||||||||||| | |||||||| |||||||| || || || ||| |||||||||| ||||| ||||| |
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| T |
41545969 |
aggtgtatcaattatcaattggagctgcatgtgggttatcatggccatctgatagaattattattcaagttcttgatgactcaacagatcc |
41546059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26786695 - 26786649
Alignment:
| Q |
1 |
ccctatggttcttgttcaagttccaatgtataatgaaagagaggtga |
47 |
Q |
| |
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|||||| |||||||||||| | |||||||| |||||||||||||||| |
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| T |
26786695 |
ccctattgttcttgttcaaatcccaatgtacaatgaaagagaggtga |
26786649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
| Q |
147 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa |
246 |
Q |
| |
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|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||| || |
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| T |
41916992 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
41917091 |
T |
|
| Q |
247 |
ggta |
250 |
Q |
| |
|
|||| |
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|
| T |
41917092 |
ggta |
41917095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 2021636 - 2021679
Alignment:
| Q |
2 |
cctatggttcttgttcaagttccaatgtataatgaaagagaggt |
45 |
Q |
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| T |
2021636 |
cctatggttcttgttcagattccaatgtgtaatgaaagagaggt |
2021679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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