View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13738_high_2 (Length: 332)
Name: NF13738_high_2
Description: NF13738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13738_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 28560260 - 28560123
Alignment:
| Q |
187 |
atgcatctgattcatggtaaattacaggaatgctgtatctgcctttctgcctatgatgatggggctgaacttagagaacttccttgcaaccaccattttc |
286 |
Q |
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| T |
28560260 |
atgcatctgattgatggtaaattacaggaatgctgtatctgcctttctgcctatgatgatggggctgaacttagagaacttccttgcaaccaccattttc |
28560161 |
T |
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| Q |
287 |
attgtacatgcatcgacaaatggctgctaatctgtgct |
324 |
Q |
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| T |
28560160 |
attgtacatgcatcgacaaatggctgctaatctgtgct |
28560123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 28560446 - 28560326
Alignment:
| Q |
1 |
gtttggtgctaaagccttactggcttatgaaaagaaaacttatttacatcatgttgttacctatttaacacctgcaaaatcatatctaaatagtgacatg |
100 |
Q |
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| T |
28560446 |
gtttggtgctaaagccttactggcttatgaaaagaaaacttatttacatcaagttgttacctatttaacacctgcaaaatcatatctaaatagtgacatg |
28560347 |
T |
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| Q |
101 |
gtaaacaatgtaaattaaagt |
121 |
Q |
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| T |
28560346 |
gtaaacaatgtaaattaaagt |
28560326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 42651851 - 42651941
Alignment:
| Q |
223 |
atctgcctttctgcctatgatgatggggctgaacttagagaacttccttgcaaccaccattttcattgtacatgcatcgacaaatggctgc |
313 |
Q |
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| T |
42651851 |
atctgcctttctgcctatgatgacggggctgaactaagacaacttccttgtggtcaccattttcactgtacctgtgtggacaaatggctgc |
42651941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 2919569 - 2919509
Alignment:
| Q |
212 |
aggaatgctgtatctgcctttctgcctatgatgatggggctgaacttagagaacttccttg |
272 |
Q |
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| T |
2919569 |
aggaatgttgcatctgcctttcttcttatgacgatggagttgaactaagagaacttccttg |
2919509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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