View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13738_low_2 (Length: 311)

Name: NF13738_low_2
Description: NF13738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13738_low_2
NF13738_low_2
[»] chr1 (7 HSPs)
chr1 (8-311)||(10233629-10233930)
chr1 (185-241)||(28689524-28689580)
chr1 (183-241)||(45999358-45999416)
chr1 (140-181)||(41505560-41505601)
chr1 (166-218)||(172670-172722)
chr1 (178-218)||(7028229-7028269)
chr1 (235-267)||(38503462-38503494)
[»] chr4 (3 HSPs)
chr4 (140-212)||(34213693-34213765)
chr4 (178-241)||(54325107-54325170)
chr4 (235-275)||(49939940-49939980)
[»] chr6 (3 HSPs)
chr6 (178-241)||(29274299-29274362)
chr6 (235-271)||(2455300-2455336)
chr6 (174-238)||(31624191-31624255)
[»] chr2 (3 HSPs)
chr2 (140-181)||(27316945-27316986)
chr2 (178-218)||(12215744-12215784)
chr2 (235-279)||(43910985-43911028)
[»] chr8 (3 HSPs)
chr8 (152-208)||(18592064-18592120)
chr8 (235-271)||(32840979-32841015)
chr8 (177-241)||(14280471-14280535)
[»] chr5 (2 HSPs)
chr5 (178-238)||(12595524-12595584)
chr5 (172-212)||(37112357-37112397)
[»] chr3 (1 HSPs)
chr3 (140-212)||(42747876-42747948)
[»] chr7 (3 HSPs)
chr7 (183-240)||(1417206-1417263)
chr7 (235-271)||(34035958-34035994)
chr7 (178-218)||(37832232-37832272)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 10233930 - 10233629
Alignment:
Q  8 atgaagttccatcaagtccaccaaaattaaaacaggtaaaacaatcagtgttctcaatactcaataatgatgattgcaaacaatatcagtatgttcaaat 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||   || |||||||||||||||||||||||    
T  10233930 atgaagttccatcaagtccactaaaattaaaacaggtaaaacaatcagtgttctcaatactcaatagtgat---tgtaaacaatatcagtatgttcaaat 10233834  T
Q  108 tccactacacaatagtgctatactatgacccttttggatagacagcttatttgcagcatataacacaaacgcttgtgtataaactatttctacagcaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10233833 tccactacacaatagtgctatactatgacccttttggatagacagcttatttgcagcatataacacaaacgcttgtgtataaactatttctacagcaaaa 10233734  T
Q  208 gataacataaatgcaaattgctttcatataagctgaaaacaacttattaacaatgtcataagttctttcaaaac-nnnnnnntgtcataagctgttttca 306  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  10233733 gataacataaatgcaaattgctttcgtataagctgaaaacaacttattaacaatgtcataagttctttcaaaacaaaaaaaatgtcataagctgttttca 10233634  T
Q  307 taagt 311  Q
    |||||    
T  10233633 taagt 10233629  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 28689580 - 28689524
Alignment:
Q  185 tataaactatttctacagcaaaagataacataaatgcaaattgctttcatataagct 241  Q
    ||||||||||||||| | |||||||||| |||||||||| | | |||||||||||||    
T  28689580 tataaactatttctatatcaaaagataaaataaatgcaagtggttttcatataagct 28689524  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 45999416 - 45999358
Alignment:
Q  183 tgtataaactatttctacagcaaaagataacataaatgcaaattgctttcatataagct 241  Q
    ||||||| ||||||||| | |||||||||| |||||  |||| ||||||||||||||||    
T  45999416 tgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagct 45999358  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 41505560 - 41505601
Alignment:
Q  140 tttggatagacagcttatttgcagcatataacacaaacgctt 181  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  41505560 tttggataaacagcttatttgcagcttatagcacaaacgctt 41505601  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 172722 - 172670
Alignment:
Q  166 tataacacaaacgcttgtgtataaactatttctacagcaaaagataacataaa 218  Q
    ||||||| |||| ||| ||||||| ||||||||| | ||||||||||||||||    
T  172722 tataacataaactcttatgtataagctatttctataacaaaagataacataaa 172670  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 7028229 - 7028269
Alignment:
Q  178 gcttgtgtataaactatttctacagcaaaagataacataaa 218  Q
    |||| ||||||||||||||||| |||||||||||| |||||    
T  7028229 gcttatgtataaactatttctatagcaaaagataaaataaa 7028269  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 38503494 - 38503462
Alignment:
Q  235 ataagctgaaaacaacttattaacaatgtcata 267  Q
    |||||||||||||||||||| ||||||||||||    
T  38503494 ataagctgaaaacaacttatgaacaatgtcata 38503462  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 34213765 - 34213693
Alignment:
Q  140 tttggatagacagcttatttgcagcatataacacaaacgcttgtgtataaactatttctacagcaaaagataa 212  Q
    ||||||||  || |||||||||||| ||||||||||| || ||||||||| ||||||||| ||||||||||||    
T  34213765 tttggataagcaacttatttgcagcttataacacaaatgcgtgtgtataagctatttctatagcaaaagataa 34213693  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 54325170 - 54325107
Alignment:
Q  178 gcttgtgtataaactatttctacagcaaaagataacataaatgcaaattgctttcatataagct 241  Q
    ||||||||||||||||||||||   |||||||||| |||||  |||| || |||||||||||||    
T  54325170 gcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 49939980 - 49939940
Alignment:
Q  235 ataagctgaaaacaacttattaacaatgtcataagttcttt 275  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  49939980 ataagctgaaaacagcttatgaacaatgtcataagctcttt 49939940  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 29274362 - 29274299
Alignment:
Q  178 gcttgtgtataaactatttctacagcaaaagataacataaatgcaaattgctttcatataagct 241  Q
    |||| ||||||| ||||||||| |||||||||||| |||||  ||||||| |||||||||||||    
T  29274362 gcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagct 29274299  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 2455300 - 2455336
Alignment:
Q  235 ataagctgaaaacaacttattaacaatgtcataagtt 271  Q
    |||||||||||||||||||| |||||||| |||||||    
T  2455300 ataagctgaaaacaacttataaacaatgtaataagtt 2455336  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 31624191 - 31624255
Alignment:
Q  174 aaacgcttgtgtataaactatttctacagcaaaagataacataaatgcaaattgctttcatataa 238  Q
    |||||||||||||||| ||||||||| | |||||||||| |||| |  |||||| |||| |||||    
T  31624191 aaacgcttgtgtataagctatttctataacaaaagataaaataagtttaaattgttttcgtataa 31624255  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 27316945 - 27316986
Alignment:
Q  140 tttggatagacagcttatttgcagcatataacacaaacgctt 181  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  27316945 tttggatagacaacttatttgcagcttataacacaaacgctt 27316986  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 12215744 - 12215784
Alignment:
Q  178 gcttgtgtataaactatttctacagcaaaagataacataaa 218  Q
    |||| ||||||||||||||||||| |||||||||| |||||    
T  12215744 gcttatgtataaactatttctacaacaaaagataaaataaa 12215784  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 43911028 - 43910985
Alignment:
Q  235 ataagctgaaaacaacttattaacaatgtcataagttctttcaaa 279  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||    
T  43911028 ataagctgaaaacaacttatgaac-atgtcataagttctctcaaa 43910985  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 18592120 - 18592064
Alignment:
Q  152 gcttatttgcagcatataacacaaacgcttgtgtataaactatttctacagcaaaag 208  Q
    ||||||||||||| |||  |||||| |||| ||||||| ||||||||||||||||||    
T  18592120 gcttatttgcagcttatggcacaaatgcttatgtataatctatttctacagcaaaag 18592064  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 32841015 - 32840979
Alignment:
Q  235 ataagctgaaaacaacttattaacaatgtcataagtt 271  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32841015 ataagctgaaaacaacttatgaacaatgtcataagtt 32840979  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 14280535 - 14280471
Alignment:
Q  177 cgcttgtgtataaactatttctacagcaaaagataacataaatgcaaattgctttcatataagct 241  Q
    ||||| ||||||| ||||||||| |||||||||||| || ||   |||||| |||||||||||||    
T  14280535 cgcttatgtataacctatttctatagcaaaagataaaattaaattaaattgttttcatataagct 14280471  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 12595584 - 12595524
Alignment:
Q  178 gcttgtgtataaactatttctacagcaaaagataacataaatgcaaattgctttcatataa 238  Q
    |||||||||||| ||||||||| |||||||||||| |||||| ||||| | |||| |||||    
T  12595584 gcttgtgtataagctatttctatagcaaaagataaaataaattcaaatagttttcgtataa 12595524  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 37112397 - 37112357
Alignment:
Q  172 acaaacgcttgtgtataaactatttctacagcaaaagataa 212  Q
    |||| ||||| ||||||| ||||||||||||||||||||||    
T  37112397 acaagcgcttatgtataagctatttctacagcaaaagataa 37112357  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 42747948 - 42747876
Alignment:
Q  140 tttggatagacagcttatttgcagcatataacacaaacgcttgtgtataaactatttctacagcaaaagataa 212  Q
    |||||||| |||||||||||||| | |||| ||||||||| | ||||||| ||||||||| || | |||||||    
T  42747948 tttggataaacagcttatttgcaacttatagcacaaacgcctatgtataagctatttctatagaataagataa 42747876  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 1417206 - 1417263
Alignment:
Q  183 tgtataaactatttctacagcaaaagataacataaatgcaaattgctttcatataagc 240  Q
    |||||||||||||| || | |||||||||| |||||  ||||||| ||||||||||||    
T  1417206 tgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagc 1417263  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 34035958 - 34035994
Alignment:
Q  235 ataagctgaaaacaacttattaacaatgtcataagtt 271  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  34035958 ataagttgaaaacaacttatgaacaatgtcataagtt 34035994  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 37832272 - 37832232
Alignment:
Q  178 gcttgtgtataaactatttctacagcaaaagataacataaa 218  Q
    |||||||||||||||||||||| ||||||| |||| |||||    
T  37832272 gcttgtgtataaactatttctatagcaaaatataaaataaa 37832232  T

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