View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13739_high_1 (Length: 939)

Name: NF13739_high_1
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13739_high_1
NF13739_high_1
[»] chr3 (13 HSPs)
chr3 (5-923)||(51524775-51525690)
chr3 (710-874)||(16893034-16893198)
chr3 (711-860)||(29346763-29346918)
chr3 (713-878)||(26796822-26796987)
chr3 (750-864)||(35526600-35526718)
chr3 (752-862)||(31067144-31067255)
chr3 (493-592)||(29347075-29347174)
chr3 (740-874)||(21844920-21845054)
chr3 (487-595)||(35526300-35526407)
chr3 (480-543)||(18028321-18028384)
chr3 (709-791)||(8357463-8357545)
chr3 (487-548)||(3367240-3367301)
chr3 (476-541)||(21844687-21844752)
[»] chr2 (11 HSPs)
chr2 (482-906)||(18811473-18811900)
chr2 (711-864)||(31092283-31092436)
chr2 (710-870)||(14296257-14296417)
chr2 (713-864)||(37344586-37344737)
chr2 (710-874)||(18693061-18693222)
chr2 (710-827)||(8413816-8413933)
chr2 (752-860)||(13502653-13502761)
chr2 (487-595)||(31092563-31092671)
chr2 (487-568)||(30180093-30180174)
chr2 (487-543)||(13502883-13502939)
chr2 (478-592)||(37344844-37344957)
[»] chr8 (14 HSPs)
chr8 (487-923)||(27786551-27786999)
chr8 (724-923)||(36206433-36206632)
chr8 (711-864)||(29369070-29369223)
chr8 (752-874)||(8831263-8831385)
chr8 (581-712)||(13885821-13885964)
chr8 (476-603)||(29369342-29369469)
chr8 (476-595)||(399497-399616)
chr8 (493-595)||(36206250-36206351)
chr8 (769-874)||(399778-399883)
chr8 (710-862)||(28225712-28225864)
chr8 (487-637)||(3801196-3801347)
chr8 (487-536)||(14295242-14295291)
chr8 (488-539)||(3072279-3072330)
chr8 (476-539)||(8831003-8831066)
[»] chr1 (13 HSPs)
chr1 (476-887)||(41034773-41035201)
chr1 (711-860)||(13061962-13062111)
chr1 (710-871)||(49491879-49492039)
chr1 (710-874)||(17114714-17114877)
chr1 (750-874)||(19394166-19394290)
chr1 (754-870)||(50903525-50903641)
chr1 (709-827)||(3374307-3374425)
chr1 (516-594)||(44163527-44163605)
chr1 (493-584)||(39332585-39332676)
chr1 (487-594)||(19393905-19394010)
chr1 (709-789)||(39332376-39332456)
chr1 (478-539)||(3374577-3374637)
chr1 (476-593)||(9094295-9094410)
[»] chr5 (15 HSPs)
chr5 (476-872)||(36868251-36868659)
chr5 (711-864)||(19215349-19215502)
chr5 (710-864)||(788274-788428)
chr5 (754-874)||(15188023-15188140)
chr5 (710-797)||(32278705-32278792)
chr5 (813-874)||(37307269-37307330)
chr5 (487-629)||(19215620-19215763)
chr5 (487-592)||(32278448-32278552)
chr5 (712-784)||(36150646-36150718)
chr5 (488-594)||(1442695-1442800)
chr5 (474-595)||(20817439-20817558)
chr5 (476-513)||(7224592-7224629)
chr5 (493-543)||(15188267-15188317)
chr5 (753-839)||(35811122-35811208)
chr5 (487-568)||(788019-788100)
[»] chr4 (11 HSPs)
chr4 (712-874)||(24239844-24240003)
chr4 (710-864)||(37049967-37050122)
chr4 (752-862)||(19852453-19852563)
chr4 (752-862)||(16593810-16593920)
chr4 (710-874)||(16832139-16832303)
chr4 (486-603)||(7492265-7492382)
chr4 (487-603)||(7500316-7500432)
chr4 (833-874)||(12579947-12579988)
chr4 (488-594)||(37050277-37050382)
chr4 (487-543)||(18522037-18522093)
chr4 (493-543)||(19852784-19852833)
[»] chr6 (10 HSPs)
chr6 (710-864)||(25167810-25167964)
chr6 (710-874)||(10989981-10990145)
chr6 (516-662)||(29473426-29473576)
chr6 (713-839)||(3949326-3949452)
chr6 (710-874)||(4263368-4263529)
chr6 (476-594)||(3949611-3949728)
chr6 (502-568)||(5605422-5605488)
chr6 (476-594)||(25168119-25168237)
chr6 (487-594)||(2606608-2606714)
chr6 (710-788)||(5605651-5605729)
[»] scaffold0531 (2 HSPs)
scaffold0531 (710-862)||(10228-10380)
scaffold0531 (493-543)||(10559-10608)
[»] chr7 (8 HSPs)
chr7 (710-872)||(26449535-26449697)
chr7 (713-826)||(19407845-19407958)
chr7 (475-592)||(7543832-7543949)
chr7 (487-568)||(19407632-19407713)
chr7 (750-874)||(33191235-33191359)
chr7 (516-657)||(26180301-26180443)
chr7 (487-644)||(29132186-29132344)
chr7 (483-594)||(34548156-34548266)


Alignment Details
Target: chr3 (Bit Score: 797; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 797; E-Value: 0
Query Start/End: Original strand, 5 - 923
Target Start/End: Complemental strand, 51525690 - 51524775
Alignment:
Q  5 gggtagataatactcatgtcaatgtcagtgttattggatttgaaatttggatgaggtgattaaaactagttagtggggaggggatataaaaatgatcatg 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51525690 gggtaaataatactcatgtcaatgtcagtgttattggatttgaaatttggatgaggtgattaaaactagttagtggggaggggatataaaaatgatcatg 51525591  T
Q  105 tttacaggcaagtggtggtacaagtagtagcggaaaataaaggatgtggtatttgtcattgactcgtgcaattcgagggaattattttcgtctttgattg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51525590 tttacaggcaagtggtggtacaagtagtagcggaaaataaaggatgtggtatttgtcattgactcgtgcaatacgagggaattattttcgtctttgattg 51525491  T
Q  205 attggaatgaaagcaaccacccacaaactnnnnnnntactgtcaataatgaaatctcaatattcatgcgtctgcttcaactattcgtgtgtatgctttat 304  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51525490 attggaatgaaagcaaccacccacaaactaaaaaaatactgtcaataatgaaatctcaatattcatgcgtctccttcaactattcgtgtgtatgctttat 51525391  T
Q  305 attgtgctcctgtattaccgtgctcttgatttcactatcaattgaaatttaaataagactttgacacactcttatatcaggtaaaaaattgagttttacc 404  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51525390 attgtgctcctgtattaccgtgctcttggtttcactatcaattgaaatttaaataagactttgacacactcttatatcaggtaaaaaattgagttttacc 51525291  T
Q  405 aaatttacatgaagtctacgtaatttgaacgtctagtccttttagcagggcaaacattggccatgaaagtattttttatttatttattaaagcactaaaa 504  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     ||||||||||||||||||    
T  51525290 aaatttacgtgaagtctacgtaatttgaacgtctagtccttttagcggggcaaacattggccatgaaagtatttttt-----tttattaaagcactaaaa 51525196  T
Q  505 tataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaaggagaagacctg 604  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  51525195 tataaaagacaggagaggcctgagccaatacaacagagttacaatgtgtaaaacctatgaaaagtaaatccggatctatcccaagaaaggagaagacctg 51525096  T
Q  605 aggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacactct--atgaaaaagggttgatctacgaagttatattgtt 702  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||||| |||||||| |||||||||||||||    
T  51525095 aggaaaatgagtcaaagaccaccatagtacagagaaactaacaactgctgcaaaactacactctctatgaaaaagtgttgatctgcgaagttatattgtt 51524996  T
Q  703 gccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcac 802  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51524995 gccttcaaaccaactattttgcatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcac 51524896  T
Q  803 tttatgcacctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaaatcttcatcatggtcttccaccactagt 902  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51524895 tttatgcacctgcttcttcttctttctctcagccttattgctctcagatagacttggatagtgctgctcaaaatcttcatcatggtcttccaccactagt 51524796  T
Q  903 cttccgtcatggctaagagtg 923  Q
    ||||||||||| |||||||||    
T  51524795 cttccgtcatgactaagagtg 51524775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 710 - 874
Target Start/End: Complemental strand, 16893198 - 16893034
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    |||||||||||| |||| || ||||| |||||||||||  |||||||| |||||||||||||||||||||||||| || |||  |||| ||||||| | |    
T  16893198 aaccaactattcggtatatggcaaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttc 16893099  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    ||||||||||| | |||| | ||||||||| ||||||| || |||||||||||||||||||||||    
T  16893098 acctgcttcttttgctttttatctgccttagtgctctctgacagacttggatagtgctgctcaaa 16893034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 711 - 860
Target Start/End: Complemental strand, 29346918 - 29346763
Alignment:
Q  711 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 810  Q
    |||||||||| ||||||||||||||  ||||||||||  | |||||| ||||||||||||||||||||| ||||||||||||||||| |||| || | ||    
T  29346918 accaactattatgtatctgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttca 29346819  T
Q  811 cctgcttcttct------tctttctctctgccttattgctctcagatagacttgga 860  Q
    ||||||||||||      ||||| |||||| |||| |||||||| |||||||||||    
T  29346818 cctgcttcttcttcttcttctttttctctgtcttagtgctctcaaatagacttgga 29346763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 713 - 878
Target Start/End: Original strand, 26796822 - 26796987
Alignment:
Q  713 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacc 812  Q
    |||||||| |||| ||||||||| | |||| ||||  || ||||||| | || |||||||| || |||||||||||||   || | ||||||| |  ||     
T  26796822 caactattatgtagctgtcaaggcaactttagaggcaccattttgggtatggttcctcatttcgactgagttaaagctggtagacttcactttgttaaca 26796921  T
Q  813 tgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaaatct 878  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||    
T  26796922 tgcttcttcttctttctctctgccttagtgctctcagatagactcggatggtgctgctcaaaatct 26796987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 750 - 864
Target Start/End: Original strand, 35526600 - 35526718
Alignment:
Q  750 cccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgcc----ttattgctc 845  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| | |||||||||||||||||| |||| || |    ||| |||||    
T  35526600 cccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttcttactctttgtcttaattagtgctc 35526699  T
Q  846 tcagatagacttggatagt 864  Q
    |||||||||||||||||||    
T  35526700 tcagatagacttggatagt 35526718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 752 - 862
Target Start/End: Complemental strand, 31067255 - 31067144
Alignment:
Q  752 cttttgggcacgggtcctcattccgg-ctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcaga 850  Q
    ||||| |||||||||||||||||| | ||||||||||||||  | |||||||||| ||||| ||||||||||||||| ||||||||||| ||||||| ||    
T  31067255 cttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgccttagtgctctccga 31067156  T
Q  851 tagacttggata 862  Q
    ||||||||||||    
T  31067155 tagacttggata 31067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 493 - 592
Target Start/End: Complemental strand, 29347174 - 29347075
Alignment:
Q  493 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaa 592  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||| ||||  | |||||| ||||||||||  || || | ||||||||||||||    
T  29347174 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 29347075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 740 - 874
Target Start/End: Original strand, 21844920 - 21845054
Alignment:
Q  740 tttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgcctta 839  Q
    |||||||| ||||||||| ||||||||||| ||| | ||||||||||| | |  || | |||||||   |||  |||||||||  ||| |||||||||||    
T  21844920 tttggaggtgcccttttgagcacgggtccttatttcagctgagttaaatcaagcagacttcacttttctcacaggcttcttctaatttttctctgcctta 21845019  T
Q  840 ttgctctcagatagacttggatagtgctgctcaaa 874  Q
     |||||||| |||| ||||||||||||||||||||    
T  21845020 atgctctcatataggcttggatagtgctgctcaaa 21845054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 595
Target Start/End: Original strand, 35526300 - 35526407
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||||| ||||||||||||||| | |||||||||| ||||||||| |||| ||||  | ||||||  |||||||||  || ||||| |||| ||    
T  35526300 tttatcaaagcaataaaatataaaagacag-agaggcctgaaccaatacaatagagatacatagagtaaaacttatgaaaagagaaaccagagctattcc 35526398  T
Q  587 aagaaagga 595  Q
    |||||||||    
T  35526399 aagaaagga 35526407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 18028321 - 18028384
Alignment:
Q  480 ttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 543  Q
    |||||| ||||| |||||||||||||||||||||   |||| |||||| |||||||||||||||    
T  18028321 ttatttttttatcaaagcactaaaatataaaagatatgagatgcctgaaccaatacaacagagt 18028384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 709 - 791
Target Start/End: Original strand, 8357463 - 8357545
Alignment:
Q  709 aaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagcta 791  Q
    ||||||||||||  |||||||||||| || ||||| || | | ||||||| |||| |||||||||  ||||||||||||||||    
T  8357463 aaaccaactatttcgtatctgtcaagataactttgaagaaactcttttggacacgagtcctcattttggctgagttaaagcta 8357545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 3367240 - 3367301
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaa 548  Q
    ||||| ||||||||||||||||||| || ||||| || |||  |||||||||||||| ||||    
T  3367240 tttatcaaagcactaaaatataaaaaacaggagatgcatgaatcaatacaacagagtcacaa 3367301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 541
Target Start/End: Original strand, 21844687 - 21844752
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacaga 541  Q
    |||||| ||| ||||| ||| |||||||||||||||||| ||||| | |||| | |||||||||||    
T  21844687 ttttttttttttttatcaaaacactaaaatataaaagacaggagatgtctgaactaatacaacaga 21844752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 482 - 906
Target Start/End: Original strand, 18811473 - 18811900
Alignment:
Q  482 atttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatct 581  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| | |||||    
T  18811473 atttttttatcaaagcactaaaatataaaagacaggagaggcctgaaccaatacaacagagttacaatatgtaaaacctatgaaaagtaaattcggatct 18811572  T
Q  582 atcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacactct--atgaaaaagg- 678  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||| |     
T  18811573 atcccaagaaaggagaagacctatggaaaaggtgtcaaagaccaccatagtacagagaaactaacaactgctacaaaactacactctctatgaaaaaagt 18811672  T
Q  679 gttgatctacgaagttatattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggc 778  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18811673 gttgatctacgcagttatactgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggc 18811772  T
Q  779 tgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaaatct 878  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |    
T  18811773 tgagttaaagctataaagcttcactttatgcacctgcttcttcttctttctctctgccttattgctctcaaataaacttggatagtgctgctcaaaattt 18811872  T
Q  879 tcatcatggtcttccaccactagtcttc 906  Q
    ||||||||||||||||||||||||||||    
T  18811873 tcatcatggtcttccaccactagtcttc 18811900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 711 - 864
Target Start/End: Complemental strand, 31092436 - 31092283
Alignment:
Q  711 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 810  Q
    ||||||||||||||||||| ||||    |||||||||  |||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| ||    
T  31092436 accaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttattca 31092337  T
Q  811 cctgcttcttcttctttctctctgccttattgctctcagatagacttggatagt 864  Q
    | || ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31092336 cgtgattcttcttctttctctctgtcttagtgctctcagatagacttggatagt 31092283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 710 - 870
Target Start/End: Original strand, 14296257 - 14296417
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    ||||||||||| |||||||| ||||| | |||||||||  ||||||||| |||| || ||||||||||||||||||||||||  |||| ||| ||| | |    
T  14296257 aaccaactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttc 14296356  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgct 870  Q
    | |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  14296357 atctgcttcttcttctttctctctaccttagtactctcagatagacttggatagtgctgct 14296417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 713 - 864
Target Start/End: Complemental strand, 37344737 - 37344586
Alignment:
Q  713 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacc 812  Q
    |||||||| ||||| ||||||||  |||||||||   ||||||||||||||  |||||||||||||||||||||| ||| || |  ||||||| | ||||    
T  37344737 caactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgttcacc 37344638  T
Q  813 tgcttcttcttctttctctctgccttattgctctcagatagacttggatagt 864  Q
    || |||||||||||||||||||||||| |||| ||| |||||||||||||||    
T  37344637 tgtttcttcttctttctctctgccttagtgctttcaaatagacttggatagt 37344586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 710 - 874
Target Start/End: Complemental strand, 18693222 - 18693061
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactt--tat 807  Q
    ||||||||||| |||||||||||||  | |||||||||| ||||||| ||||| |||||||||||||||| |||||||||||  || | ||||||  | |    
T  18693222 aaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactttgttt 18693123  T
Q  808 gcacctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    ||||      |||||||||| ||||||||||| |||||||| | ||  |||||||||||||| ||||    
T  18693122 gcac-----gcttcttctttttctctgccttagtgctctcataaaggtttggatagtgctgcacaaa 18693061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 710 - 827
Target Start/End: Original strand, 8413816 - 8413933
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    |||||||||||| |||| || || |  |||||||||||  |||||||| ||||||||||||||||||| |||||| ||||||  |||| ||||||| | |    
T  8413816 aaccaactattcagtatatggcaggacagctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttc 8413915  T
Q  810 acctgcttcttcttcttt 827  Q
     |||||||||||| ||||    
T  8413916 gcctgcttcttctgcttt 8413933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 752 - 860
Target Start/End: Complemental strand, 13502761 - 13502653
Alignment:
Q  752 cttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagat 851  Q
    |||||||||||||  |||||||| ||||||||||||||||  || |||  |||| | |||  |||||||||||||| ||||||||||| ||||||| ||     
T  13502761 cttttgggcacggaccctcattctggctgagttaaagctagcagaccttcctttgttcacgagcttcttcttctttttctctgccttagtgctctccgaa 13502662  T
Q  852 agacttgga 860  Q
    |||||||||    
T  13502661 agacttgga 13502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 487 - 595
Target Start/End: Complemental strand, 31092671 - 31092563
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||||| ||||||||||||||| |||||| ||||| ||||||||||| |  ||||  | |||||| ||||||||||  |||| ||||| |||||    
T  31092671 tttatcaaagcaataaaatataaaagacgggagagacctgaaccaatacaacaaatatacatagagtaaaacctatgaaaagagaatctagatcaatccc 31092572  T
Q  587 aagaaagga 595  Q
    |||||||||    
T  31092571 aagaaagga 31092563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 568
Target Start/End: Complemental strand, 30180174 - 30180093
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 568  Q
    ||||| |||||| ||||||||||| |||  |||||||||||  ||||||| |||||| |||| |||||||||||||||||||    
T  30180174 tttatcaaagcaataaaatataaacgacgagagaggcctgaatcaatacaccagagtcacaaagtgtaaaatctatgaaaag 30180093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 487 - 543
Target Start/End: Complemental strand, 13502939 - 13502883
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 543  Q
    ||||| |||||||||||||||||||||| ||||| || |||  ||||||||||||||    
T  13502939 tttatcaaagcactaaaatataaaagacaggagatgcatgaatcaatacaacagagt 13502883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 478 - 592
Target Start/End: Complemental strand, 37344957 - 37344844
Alignment:
Q  478 ttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccag 577  Q
    |||| ||| ||||| |||||| ||||||||||||| | |||||||  ||| |||||||| |||||| |||  |||||||| ||| ||||||  ||  | |    
T  37344957 ttttttttttttatcaaagcaataaaatataaaag-caggagaggtttgaaccaatacatcagagtcacatagtgtaaaacctacgaaaagagaaatcgg 37344859  T
Q  578 atctatcccaagaaa 592  Q
    |||||||||||||||    
T  37344858 atctatcccaagaaa 37344844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 215; Significance: 1e-117; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 487 - 923
Target Start/End: Original strand, 27786551 - 27786999
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| ||||||||||||||||||| || |||||||||||| ||||||||||| ||| ||||||||||| | |||||||||| |||  | ||||||||||    
T  27786551 tttatcaaagcactaaaatataaaatacaggagaggcctgaaccaatacaacaaagtcacaatgtgtaagacctatgaaaagaaaagtcggatctatccc 27786650  T
Q  587 aagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacact--ctatgaaaa--------- 675  Q
    ||||||||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||| ||| |||||||||||| ||  |||||||||             
T  27786651 aagaaaggaaaagacctaaggaaaaggtgtcacacaccaccatagtacagagaaactaaccactactacaaaactaccctttctatgaaaatttgaacca 27786750  T
Q  676 -agggttgatctacgaagttatattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattc 774  Q
     || | ||||||||| |||||||  ||| ||||  ||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  27786751 aagtgatgatctacgcagttataccgtttcctttgaaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattc 27786850  T
Q  775 cggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    ||||||||||||||||| ||||| ||||||||| || |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27786851 cggctgagttaaagctagaaggcttcactttattcatctgcttattcttctttctctccgccttattgctctcagatagacttggatagtgctgctcaaa 27786950  T
Q  875 atcttcatcatggtcttccaccactagtcttccgtcatggctaagagtg 923  Q
     ||| ||||||||||||| ||| |||||||| | ||||| || ||||||    
T  27786951 gtctccatcatggtcttcaaccgctagtctttcatcatgactgagagtg 27786999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 724 - 923
Target Start/End: Original strand, 36206433 - 36206632
Alignment:
Q  724 tatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttctt 823  Q
    |||||||||||| | |||||||||| | ||||| |||||| |||||||||||| || ||||||||||| ||||| ||||||||| ||  |||||||||||    
T  36206433 tatctgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttctt 36206532  T
Q  824 ctttctctctgccttattgctctcagatagacttggatagtgctgctcaaaatcttcatcatggtcttccaccactagtcttccgtcatggctaagagtg 923  Q
    |||||||||||||||  |||||||||||||||||||| |||| |||||||| ||| || ||||| |||||| | | |||||  |||||||||| ||||||    
T  36206533 ctttctctctgccttggtgctctcagatagacttggaaagtgttgctcaaagtctacaacatggacttccatctcaagtctctcgtcatggctgagagtg 36206632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 711 - 864
Target Start/End: Complemental strand, 29369223 - 29369070
Alignment:
Q  711 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 810  Q
    ||||||||||||||||||| |||||  | |||||| |   |||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||||| ||    
T  29369223 accaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattca 29369124  T
Q  811 cctgcttcttcttctttctctctgccttattgctctcagatagacttggatagt 864  Q
    | ||||||||||||||| ||| || |||| ||||||||||||||||||||||||    
T  29369123 cgtgcttcttcttctttatctttgtcttagtgctctcagatagacttggatagt 29369070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 752 - 874
Target Start/End: Original strand, 8831263 - 8831385
Alignment:
Q  752 cttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagat 851  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||||||||| | ||  ||||||||||||| | ||||||||||| |||||||||||    
T  8831263 cttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgccttagtgctctcagat 8831362  T
Q  852 agacttggatagtgctgctcaaa 874  Q
    ||||||||||| || ||||||||    
T  8831363 agacttggataatgttgctcaaa 8831385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 581 - 712
Target Start/End: Original strand, 13885821 - 13885964
Alignment:
Q  581 tatcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaac--tacactctatga------ 672  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||  ||| ||||||||          
T  13885821 tatcccaagaaaggagaagacctaagaaaaaggtgtcaaagaccaccatagtacagagaaactaacaactgttacaaaactatactctctatgacaattt 13885920  T
Q  673 ----aaaagggttgatctacgaagttatattgttgccttcaaac 712  Q
        ||||| ||||||||||| ||||||||||||||||||||||    
T  13885921 gaacaaaagtgttgatctacgcagttatattgttgccttcaaac 13885964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 476 - 603
Target Start/End: Complemental strand, 29369469 - 29369342
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 575  Q
    |||||| ||| ||||| |||||| ||||||||||||||| |||||||||||  |||||||||||||| ||||  | |||||| ||||||||||  |||||    
T  29369469 ttttttttttttttatcaaagcaataaaatataaaagacaggagaggcctggaccaatacaacagagatacatagagtaaaacctatgaaaagagaatcc 29369370  T
Q  576 agatctatcccaagaaaggagaagacct 603  Q
     |||| |||||||||||||| |||||||    
T  29369369 ggatcaatcccaagaaaggaaaagacct 29369342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 476 - 595
Target Start/End: Original strand, 399497 - 399616
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 575  Q
    |||||| ||| ||||| ||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||| | |||   ||||||| ||||||    
T  399497 ttttttttttttttatcaaatcactaaaatataaaagacaggagatgcctgaaccaatacaacagagttacaaggtgaataatacgtgaaaagaaaatcc 399596  T
Q  576 agatctatcccaagaaagga 595  Q
    ||||||||||| | ||||||    
T  399597 agatctatccctataaagga 399616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 493 - 595
Target Start/End: Original strand, 36206250 - 36206351
Alignment:
Q  493 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaa 592  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| |||| ||| ||||| |||||| |  |||||| ||| || ||||||||||||||||    
T  36206250 aaagcactaaaatataaaagacaggagaggcctgaatcaatacatcagatttaaaatgtataaaatttgggaaaag-aaaaccggatctatcccaagaaa 36206348  T
Q  593 gga 595  Q
    |||    
T  36206349 gga 36206351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 769 - 874
Target Start/End: Original strand, 399778 - 399883
Alignment:
Q  769 tcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctg 868  Q
    |||||||| |||| |||||||||  |  ||||||||| | ||| || |||||||||||||||||||||||| |||||||| ||| ||| |||||||| ||    
T  399778 tcattccgactgaattaaagctagcaaacctcactttgttcacatgtttcttcttctttctctctgccttagtgctctcatataaactcggatagtgttg 399877  T
Q  869 ctcaaa 874  Q
    ||||||    
T  399878 ctcaaa 399883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 710 - 862
Target Start/End: Original strand, 28225712 - 28225864
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    ||||||||||| | ||  || |||| ||||||| ||||   |||||||| |||  |||||||||||||||||||||||| ||  |  | |||||||   |    
T  28225712 aaccaactattttatagttgccaagatagcttttgaggtatccttttggacacatgtcctcattccggctgagttaaagttaacaaacttcactttgatc 28225811  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggata 862  Q
    || ||||||||||| | ||||||| ||||| ||||||||||||||||||||||    
T  28225812 acatgcttcttcttttctctctctaccttagtgctctcagatagacttggata 28225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 487 - 637
Target Start/End: Complemental strand, 3801347 - 3801196
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||| | ||||||||||||||| ||||||| |||| |||||||| ||||| ||||  |  ||||| ||||||||||  || || |||||||||     
T  3801347 tttatcaaagtaataaaatataaaagacaggagaggtctgaaccaatacatcagagatacatggaataaaacctatgaaaagagaaaccggatctatcct 3801248  T
Q  587 aagaaaggagaagacctgaggaaa-aggagtcaaagaccaccatagtacata 637  Q
    ||||||||  | ||||| |||||| ||| ||||||||| ||| || ||||||    
T  3801247 aagaaaggcaaggacctaaggaaagaggtgtcaaagacaaccgtattacata 3801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 487 - 536
Target Start/End: Original strand, 14295242 - 14295291
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaataca 536  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  14295242 tttatcaaagcactaaaatataaaagacaggagaggcctgaaccaataca 14295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 3072279 - 3072330
Alignment:
Q  488 ttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaaca 539  Q
    |||| |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  3072279 ttatcaaagcactaaaatataaaagacaggagatgcctgaaccaatacaaca 3072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 476 - 539
Target Start/End: Original strand, 8831003 - 8831066
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaaca 539  Q
    |||||| ||| ||||| |||||||||||||||||||||| ||||| | |||| |||||||||||    
T  8831003 ttttttttttttttatcaaagcactaaaatataaaagacaggagatgtctgaaccaatacaaca 8831066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 476 - 887
Target Start/End: Original strand, 41034773 - 41035201
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 575  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||| |||| |||||||| |||||| |||||||| |||| |||||||||| ||| ||    
T  41034773 ttttttattt-tttatcaaagcactaaaatataaaagacaggagaggtctgaaccaatacaccagagtcacaatgtgaaaaacctatgaaaagaaaaacc 41034871  T
Q  576 agatctatcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacactct--atgaa 673  Q
     |||||||| |||||||||| ||||||  ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||||    
T  41034872 cgatctatcacaagaaaggaaaagacccaaggaaaaggtgtcaaagaccaccatagtacagagaaactaacaactgctacaaaactaccctctcgatgaa 41034971  T
Q  674 aa----------agggttgatctacgaagtta------tattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttg 757  Q
    ||          || |||||| |||| |||||      || | |||| ||| |||||||||||| | || || ||||||||||||||||||||| |||||    
T  41034972 aatttgaacaaaagtgttgatatacgcagttaaactaatactattgctttctaaccaactattcagaatttgccaaggtagctttggaggagcctttttg 41035071  T
Q  758 ggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagatagactt 857  Q
    |||||||||||||||||||||||||||||||||| ||||| |||   ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41035072 ggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttcttcttctttttctctgccttattgctctcagatagactt 41035171  T
Q  858 ggatagtgctgctcaaaatcttcatcatgg 887  Q
    |||||||| || ||||| ||||| ||||||    
T  41035172 ggatagtgttgttcaaagtcttcgtcatgg 41035201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 711 - 860
Target Start/End: Original strand, 13061962 - 13062111
Alignment:
Q  711 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 810  Q
    ||||| |||||||||| ||||||||  ||||||||||  | |||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||| | ||    
T  13061962 accaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttca 13062061  T
Q  811 cctgcttcttcttctttctctctgccttattgctctcagatagacttgga 860  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  13062062 cctgcttcttcttctttttctctgtcttagtgctctcagatagacttgga 13062111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 710 - 871
Target Start/End: Original strand, 49491879 - 49492039
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    |||||||||||| ||||  | ||||| | |||||||||  ||||||||||||||||||||||||||||||||||| ||||||  ||| |||||||| | |    
T  49491879 aaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtagg-ctcactttgttc 49491977  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctc 871  Q
    || |||||||||| ||||||| |||||||| |||||||  | |||||||||||||| |||||    
T  49491978 acatgcttcttctgctttctccctgccttagtgctctctaacagacttggatagtgttgctc 49492039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 710 - 874
Target Start/End: Original strand, 17114714 - 17114877
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    ||||||||||||| || ||| |||||  ||||||||||  ||||||||| || |||||||||||| ||| ||||||||||||  |||| ||||||| | |    
T  17114714 aaccaactattctatagctg-caaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttc 17114812  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    || || ||||||||||||||||||| |||| |||||||||||||||||| |||||| || |||||    
T  17114813 acatgtttcttcttctttctctctgtcttagtgctctcagatagacttgcatagtgttggtcaaa 17114877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 750 - 874
Target Start/End: Original strand, 19394166 - 19394290
Alignment:
Q  750 cccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcag 849  Q
    |||||||||||||||||||||||||| ||| ||||||||| | ||||| |||||||   ||| ||||||||||||||| ||||||| ||| ||||||| |    
T  19394166 cccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgctttagtgctctccg 19394265  T
Q  850 atagacttggatagtgctgctcaaa 874  Q
    |||| ||||||||||||||||||||    
T  19394266 ataggcttggatagtgctgctcaaa 19394290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 754 - 870
Target Start/End: Original strand, 50903525 - 50903641
Alignment:
Q  754 tttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagatag 853  Q
    |||||||||||||||||||| |||||||||| ||||||  |||| ||||||| | |||||||||||||| ||||| |||||||||| ||||||| || ||    
T  50903525 tttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttcactctgccttagtgctctctgacag 50903624  T
Q  854 acttggatagtgctgct 870  Q
    |||||||||||| ||||    
T  50903625 acttggatagtgttgct 50903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 709 - 827
Target Start/End: Complemental strand, 3374425 - 3374307
Alignment:
Q  709 aaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatg 808  Q
    ||||||||||||||||| ||  ||||| ||||||||||   |||||||||||||  ||||||||||||||||||||||| |||   ||| ||||||| |     
T  3374425 aaaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgtt 3374326  T
Q  809 cacctgcttcttcttcttt 827  Q
    ||| |||||||||||||||    
T  3374325 cacttgcttcttcttcttt 3374307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 516 - 594
Target Start/End: Original strand, 44163527 - 44163605
Alignment:
Q  516 ggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaagg 594  Q
    |||||||||||| ||||||||||||||| |||  |||||||| ||||||||||  || || ||||||||||||||||||    
T  44163527 ggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaagg 44163605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 493 - 584
Target Start/End: Complemental strand, 39332676 - 39332585
Alignment:
Q  493 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatc 584  Q
    |||||||||||||||||||||| ||||| ||||||  |||||||||||||| | |  ||| | ||  ||||||||| |||||||||||||||    
T  39332676 aaagcactaaaatataaaagacaggagatgcctgaatcaatacaacagagtcatatagtggataacttatgaaaagaaaatccagatctatc 39332585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 594
Target Start/End: Original strand, 19393905 - 19394010
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||||||||||||||||||||| ||||| | |||| ||||||||  ||||| ||| |||| | || ||||| ||||  |||| |||||||||||    
T  19393905 tttatcaaagcactaaaatataaaagacaggagatgtctgaaccaataca--agagtcacattgtggagaacctatggaaagagaatctagatctatccc 19394002  T
Q  587 aagaaagg 594  Q
     |||||||    
T  19394003 tagaaagg 19394010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 789
Target Start/End: Complemental strand, 39332456 - 39332376
Alignment:
Q  709 aaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagc 789  Q
    ||||||| ||||||||| ||| ||||  |  |||| |||  |||||||||||||||||||||||| |||||||||||||||    
T  39332456 aaaccaattattctgtagctgccaagtcatttttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagc 39332376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 3374637 - 3374577
Alignment:
Q  478 ttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaaca 539  Q
    |||||||| ||||| ||||||||||||||||||||||   ||| |||||| |||||||||||    
T  3374637 ttttattt-tttatcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 3374577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 593
Target Start/End: Original strand, 9094295 - 9094410
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 575  Q
    |||||||||| ||||| |||||| |||||||||||||   |||||||| | | || ||||| ||||||||||  |||||||| ||||||||||  ||       
T  9094295 ttttttattt-tttataaaagcaataaaatataaaag-taggagaggcttaaacccatacatcagagttacatagtgtaaaacctatgaaaagagaaata 9094392  T
Q  576 agatctatcccaagaaag 593  Q
    |||||||| |||||||||    
T  9094393 agatctattccaagaaag 9094410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 4e-96; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 476 - 872
Target Start/End: Complemental strand, 36868659 - 36868251
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 575  Q
    |||||| ||| ||||| ||| |||||||||||||||||  |||||||||||| ||||||||||| ||| ||||||||||| | |||||||||| |||  |    
T  36868659 ttttttttttttttatcaaaacactaaaatataaaagataggagaggcctgaaccaatacaacacagtcacaatgtgtaagacctatgaaaagaaaaatc 36868560  T
Q  576 agatctatcccaagaaaggagaagacctgaggaaaaggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaactacactct--atgaa 673  Q
     ||||||||||||||||||| ||||||| || |||||| ||||||||||||||| | ||| |||||| | | ||| |||||||||||| ||||  |||||    
T  36868559 ggatctatcccaagaaaggaaaagacctaagaaaaaggtgtcaaagaccaccatggaacacagaaaccacccactactacaaaactaccctctctatgaa 36868460  T
Q  674 aa----------agggttgatctacgaagttatattgttgccttcaaaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacg 763  Q
    ||          |  ||||||||||| ||||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  36868459 aatttgaaccaaaatgttgatctacgcagttatactgttgcctttgaaccaactattatgtatctgtcaaggtagctttggaggaacccttttggacacg 36868360  T
Q  764 ggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagatagacttggatag 863  Q
    || ||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||  |||||||||||||||||  ||||||||||    
T  36868359 ggccctcattccggctgagttaaagctagaaggcttcactttattcacttgcttcttcttctttctctccaccttattgctctcagattaacttggatag 36868260  T
Q  864 tgctgctca 872  Q
    |||| ||||    
T  36868259 tgctactca 36868251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 711 - 864
Target Start/End: Complemental strand, 19215502 - 19215349
Alignment:
Q  711 accaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgca 810  Q
    ||||||||||||||||||| ||||| || |||| |||  ||||||||||| ||||||||||||| |||||||||||||||| | ||| ||||||| | ||    
T  19215502 accaactattctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttca 19215403  T
Q  811 cctgcttcttcttctttctctctgccttattgctctcagatagacttggatagt 864  Q
    |||||||||||||| ||||||||| |||| |||||||| |||| ||||||||||    
T  19215402 cctgcttcttcttcattctctctgtcttagtgctctcaaataggcttggatagt 19215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 710 - 864
Target Start/End: Original strand, 788274 - 788428
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    |||||| |||||| ||| ||||||||  ||||||||||| |||||||||||||| ||||||||  || ||||||||||| || ||||| ||| ||| | |    
T  788274 aaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttcattttgttc 788373  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagt 864  Q
    | |||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  788374 atctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagt 788428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 754 - 874
Target Start/End: Complemental strand, 15188140 - 15188023
Alignment:
Q  754 tttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagatag 853  Q
    |||||||||||||||||||||  |||||||||||||||| |||| |||||||   ||  ||   |||||||||| ||||||| ||| |||||||| ||||    
T  15188140 tttgggcacgggtcctcattctagctgagttaaagctatcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatatag 15188044  T
Q  854 acttggatagtgctgctcaaa 874  Q
     ||||||||||||||||||||    
T  15188043 gcttggatagtgctgctcaaa 15188023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 710 - 797
Target Start/End: Original strand, 32278705 - 32278792
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggc 797  Q
    |||| |||||||||||||||||||||  ||||||||||  |||||||||| |||  || ||||||||||||||||||| ||| |||||    
T  32278705 aacccactattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactagaaggc 32278792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 813 - 874
Target Start/End: Original strand, 37307269 - 37307330
Alignment:
Q  813 tgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||| ||||||    
T  37307269 tgcttcttcttctttctctctaccttagtgctctcagacagacttagatagtgctactcaaa 37307330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 487 - 629
Target Start/End: Complemental strand, 19215763 - 19215620
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||| | ||||||||||||||  |||||||||||| |||||||||||||| | ||  |  ||||| ||||||||||  || | |||||||| ||    
T  19215763 tttatcaaagtaataaaatataaaagataggagaggcctgaaccaatacaacagagatgcatagactaaaacctatgaaaagagaaactagatctattcc 19215664  T
Q  587 aagaaaggagaagacctgaggaaa-aggagtcaaagaccaccat 629  Q
    ||||||||| | ||||| | |||| ||| ||||||||| |||||    
T  19215663 aagaaaggaaaggacctaatgaaataggtgtcaaagacaaccat 19215620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 487 - 592
Target Start/End: Original strand, 32278448 - 32278552
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| || ||| ||||||||||||| | | |||||||||| |||||||| |||||| |||  |||||||| ||||||||||  || || ||||||||||    
T  32278448 tttatcaaggcaataaaatataaaag-cagaagaggcctgaaccaatacatcagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatccc 32278546  T
Q  587 aagaaa 592  Q
    ||||||    
T  32278547 aagaaa 32278552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 784
Target Start/End: Original strand, 36150646 - 36150718
Alignment:
Q  712 ccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagtt 784  Q
    |||||||||  |||| || | |||||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  36150646 ccaactatttggtatatgccgaggtagctttggaggtatccttttgggcacgagtcctcattccggctgagtt 36150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 594
Target Start/End: Original strand, 1442695 - 1442800
Alignment:
Q  488 ttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccca 587  Q
    |||| |||||| ||||||||||||| | |||||||| ||| |||||||| |||||| |||   |||||||  || ||||||  || ||||||||||||||    
T  1442695 ttatcaaagcaataaaatataaaag-caggagaggcatgaaccaatacatcagagtcacatattgtaaaacataagaaaagagaaaccagatctatccca 1442793  T
Q  588 agaaagg 594  Q
    |||||||    
T  1442794 agaaagg 1442800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 595
Target Start/End: Original strand, 20817439 - 20817558
Alignment:
Q  474 tattttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaat 573  Q
    |||||||| ||| ||||| |||||| |||||||  |||||  ||||||||||||  ||||||| |||| | | ||||| ||||| || ||||||| |||     
T  20817439 tattttttttttttttatcaaagcattaaaata--aaagataggagaggcctgattcaatacatcagattcaaaatgtataaaacctgtgaaaagaaaaa 20817536  T
Q  574 ccagatctatcccaagaaagga 595  Q
     ||||||||||| |||||||||    
T  20817537 tcagatctatcctaagaaagga 20817558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 7224629 - 7224592
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaaga 513  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7224629 ttttttatttatttattaaaacactaaaatataaaaga 7224592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 15188317 - 15188267
Alignment:
Q  493 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 543  Q
    ||||||||||||||||||||||  |||| |||||| | |||||||||||||    
T  15188317 aaagcactaaaatataaaagacaagagatgcctgaacgaatacaacagagt 15188267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 753 - 839
Target Start/End: Complemental strand, 35811208 - 35811122
Alignment:
Q  753 ttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgcctta 839  Q
    |||||| |||| |||||||||||  |||| |||||| || ||  | | ||||||| ||||||||||||||||| |||||||| ||||    
T  35811208 ttttggacacgagtcctcattccaactgaattaaagttagaacactttactttattcacctgcttcttcttctatctctctgtctta 35811122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 568
Target Start/End: Original strand, 788019 - 788100
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 568  Q
    ||||| ||| || ||||||||||||||| ||||| |||||| |||||||||||  ||  ||  ||||||||||||| |||||    
T  788019 tttatcaaaacaataaaatataaaagacaggagaagcctgaaccaatacaacatggtcgcatagtgtaaaatctataaaaag 788100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 9e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 712 - 874
Target Start/End: Original strand, 24239844 - 24240003
Alignment:
Q  712 ccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcac 811  Q
    ||||||||| |||||||| |||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||    
T  24239844 ccaactattatgtatctgccaagatagcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcactttattcac 24239943  T
Q  812 ctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
       || |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  24239944 ---ctacttcttctttctcgatgccttagtgctctcagatagacttggatagtgctgctcaaa 24240003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 710 - 864
Target Start/End: Complemental strand, 37050122 - 37049967
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagcta-taaggcctcactttatg 808  Q
    ||||||||||| ||||||| |||| |  ||||||||||  |||||||||||||| ||||||||||||||||||||||| |||  ||||| ||||||| |     
T  37050122 aaccaactattttgtatctctcaaagcggctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactttgtt 37050023  T
Q  809 cacctgcttcttcttctttctctctgccttattgctctcagatagacttggatagt 864  Q
    ||| || |||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  37050022 cacatgtttcttcttctttttctctgccttagtgctttcagatagacttggatagt 37049967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 752 - 862
Target Start/End: Complemental strand, 19852563 - 19852453
Alignment:
Q  752 cttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagat 851  Q
    ||||||||||||||| |||||||||| ||||||||| |||  |||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||| |||    
T  19852563 cttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgccttagtgctctccgat 19852464  T
Q  852 agacttggata 862  Q
    |||||||||||    
T  19852463 agacttggata 19852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 752 - 862
Target Start/End: Original strand, 16593810 - 16593920
Alignment:
Q  752 cttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcagat 851  Q
    ||||||||||||||| |||||||||||| ||||||| |||  |||||||||||| ||||| ||||||| ||||||| ||||||||||| ||||||| |||    
T  16593810 cttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttctacttctttttctctgccttagtgctctccgat 16593909  T
Q  852 agacttggata 862  Q
    |||||||||||    
T  16593910 agacttggata 16593920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 710 - 874
Target Start/End: Original strand, 16832139 - 16832303
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    |||| |||||| |||||||| ||||  |||||||||||  ||||||||  |||| |||||||||||  ||||||||||| ||  |||| ||||||| | |    
T  16832139 aaccgactattatgtatctgccaagacagctttggaggcacccttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttc 16832238  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    || |||||||| ||| |||||||||||||| | |||| ||| ||| ||||| | |||||||||||    
T  16832239 acatgcttcttattccttctctctgccttagttctctaagaaagagttggacaatgctgctcaaa 16832303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 486 - 603
Target Start/End: Complemental strand, 7492382 - 7492265
Alignment:
Q  486 atttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcc 585  Q
    |||||| |||| | ||||||||||||||| ||| |||||| | |||||||||||||| ||||  | |||||| |||| |||||  ||||| |||| ||||    
T  7492382 atttatcaaagtaataaaatataaaagacaggataggcctcaaccaatacaacagagatacatagagtaaaacctattaaaagagaatccggatcaatcc 7492283  T
Q  586 caagaaaggagaagacct 603  Q
    |||||||||| |||||||    
T  7492282 caagaaaggaaaagacct 7492265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 487 - 603
Target Start/End: Complemental strand, 7500432 - 7500316
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||||| |||||||||| |||| ||| |||||||| |||||||||||||  ||||  | |||||| |||| |||||  ||||| |||| |||||    
T  7500432 tttatcaaagcaataaaatataacagacaggataggcctgaaccaatacaacagaaatacatagagtaaaacctattaaaagagaatccggatcaatccc 7500333  T
Q  587 aagaaaggagaagacct 603  Q
    ||||||||| |||||||    
T  7500332 aagaaaggaaaagacct 7500316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 833 - 874
Target Start/End: Original strand, 12579947 - 12579988
Alignment:
Q  833 tgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  12579947 tgccttattgctctctgatagacttggatagtgctgctcaaa 12579988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 594
Target Start/End: Complemental strand, 37050382 - 37050277
Alignment:
Q  488 ttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccca 587  Q
    |||| |||||| ||||||||||||| |  |||||||| || ||||||||||||||| |||  |||||||| ||||||||||  || |  |||||||||||    
T  37050382 ttatcaaagcaataaaatataaaag-catgagaggcccgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactggatctatccca 37050284  T
Q  588 agaaagg 594  Q
    | |||||    
T  37050283 ataaagg 37050277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 18522037 - 18522093
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 543  Q
    ||||| |||||| ||||||||||||||| |||||||||||| |||||| | ||||||    
T  18522037 tttatcaaagcaataaaatataaaagacaggagaggcctgaaccaatatatcagagt 18522093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 19852833 - 19852784
Alignment:
Q  493 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 543  Q
    |||||||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  19852833 aaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagagt 19852784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 710 - 864
Target Start/End: Complemental strand, 25167964 - 25167810
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    ||||||||||||||||||||||||||  ||||||||||  |||||||||||| | |||||| |||||||||||||||| ||| ||||| ||||||| | |    
T  25167964 aaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttgttc 25167865  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagt 864  Q
    || || |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  25167864 acatgtttcttcttctttctctctgccttagtgctttcagatagacttggatagt 25167810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 710 - 874
Target Start/End: Complemental strand, 10990145 - 10989981
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    ||||||||||| ||||||||| | || |||||||||||| |||||||| ||||| ||||||||| ||||| ||||||||||| ||||  ||||||| | |    
T  10990145 aaccaactattttgtatctgttagggcagctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgttc 10990046  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
     | |||| ||||||||||||| |||||||| |||||||||||  || ||||||||||||||||||    
T  10990045 tcttgctgcttcttctttctcgctgccttagtgctctcagatttacatggatagtgctgctcaaa 10989981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 516 - 662
Target Start/End: Original strand, 29473426 - 29473576
Alignment:
Q  516 ggagaggcctgagccaatacaacagagttacaatgtgtaaaatcta----tgaaaagtaaatccagatctatcccaagaaaggagaagacctgaggaaaa 611  Q
    |||||||||||| |||||||| ||||||||||||||| |||| |||    ||||||| ||| |  ||||||||||||||||||| ||||||  |||||||    
T  29473426 ggagaggcctgaaccaatacaccagagttacaatgtgaaaaacctacctatgaaaagaaaaacatgatctatcccaagaaaggaaaagacccaaggaaaa 29473525  T
Q  612 ggagtcaaagaccaccatagtacatagaaactaacaactgctacaaaacta 662  Q
    || ||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  29473526 ggcgtcaaagaccaccatagtataaagaaactaacaactgctacgaaacta 29473576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 713 - 839
Target Start/End: Complemental strand, 3949452 - 3949326
Alignment:
Q  713 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacc 812  Q
    ||||||||||| |||||||||||  ||||||||||  ||||| ||  |||| |||||||||| |||| ||||||| ||| || || ||||||||| ||||    
T  3949452 caactattctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcactttattcacc 3949353  T
Q  813 tgcttcttcttctttctctctgcctta 839  Q
    || ||||||||||||| ||||||||||    
T  3949352 tgtttcttcttctttccctctgcctta 3949326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 710 - 874
Target Start/End: Original strand, 4263368 - 4263529
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    |||||||||||| ||||||| ||||  |  ||||||||| |||||||| ||||||||||||||||||||||||||||| |||  |||| ||| ||| |      
T  4263368 aaccaactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttgttt 4263467  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctcaaa 874  Q
    || ||||   |||||||| ||||||||||| |||||| ||| ||  ||||||||||| |||||||    
T  4263468 acatgct---tcttctttttctctgccttagtgctcttagaaaggtttggatagtgccgctcaaa 4263529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 476 - 594
Target Start/End: Complemental strand, 3949728 - 3949611
Alignment:
Q  476 ttttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatcc 575  Q
    |||||||||| ||||| |||||| ||||||||||||| |  |||||| |||| ||||||||||||||  |||  |||||||| ||||||||||  || ||    
T  3949728 ttttttatttttttatcaaagcaataaaatataaaag-catgagaggtctgaaccaatacaacagagacacatagtgtaaaacctatgaaaagagaaacc 3949630  T
Q  576 agatctatcccaagaaagg 594  Q
     ||||||||| ||||||||    
T  3949629 ggatctatcctaagaaagg 3949611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 502 - 568
Target Start/End: Original strand, 5605422 - 5605488
Alignment:
Q  502 aaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 568  Q
    ||||||| ||||  |||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  5605422 aaatatagaagataggagaggcttgagccaatacaacagagtcacaatgtgtaaaacctatgaaaag 5605488  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 476 - 594
Target Start/End: Complemental strand, 25168237 - 25168119
Alignment:
Q  476 ttttttatttatttatt-aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatc 574  Q
    |||||| ||| |||||| |||||| |||||||||||||   |||||||||||| ||||||||||||||| |||  |||||||| ||||||||||  || |    
T  25168237 ttttttttttttttattcaaagcagtaaaatataaaagta-ggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaac 25168139  T
Q  575 cagatctatcccaagaaagg 594  Q
     | ||||||||||| |||||    
T  25168138 taaatctatcccaataaagg 25168119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 487 - 594
Target Start/End: Original strand, 2606608 - 2606714
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||||| ||||||||||||| | ||||| |||||| |||||||| |||||| |||| ||| |||| ||||||||||  || |  |||||||||     
T  2606608 tttatcaaagcagtaaaatataaaag-ctggagaagcctgaaccaatacatcagagtcacaaagtgaaaaacctatgaaaagagaaactggatctatcct 2606706  T
Q  587 aagaaagg 594  Q
    ||||||||    
T  2606707 aagaaagg 2606714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 710 - 788
Target Start/End: Original strand, 5605651 - 5605729
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaag 788  Q
    ||||||||||| ||||||||| |||| ||||||| || | |  ||||| ||||| | |||| |||||||||||||||||    
T  5605651 aaccaactattttgtatctgttaaggcagctttgaagaaactattttgagcacgagccctcgttccggctgagttaaag 5605729  T

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Target: scaffold0531 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 710 - 862
Target Start/End: Complemental strand, 10380 - 10228
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    ||||||||||| |||| ||| ||||  ||||||||||   | ||||| |||||||||||||||||||||||||||||| |||  |||||||||||| |||    
T  10380 aaccaactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgtgc 10281  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggata 862  Q
    || ||||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  10280 acgtgcttcttcttctttttctctgccttagtgctctccgatagacttggata 10228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 10608 - 10559
Alignment:
Q  493 aaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagt 543  Q
    |||||||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  10608 aaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagagt 10559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 710 - 872
Target Start/End: Original strand, 26449535 - 26449697
Alignment:
Q  710 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 809  Q
    |||||||||||  |||| |||| ||| || ||||||||  ||||||||| |||| |||||||||||||||||| | ||||||  |||| ||||| | | |    
T  26449535 aaccaactatttggtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctgttc 26449634  T
Q  810 acctgcttcttcttctttctctctgccttattgctctcagatagacttggatagtgctgctca 872  Q
    ||||||||||||| |||||||||||||||| ||||||| || | ||| |||||||| ||||||    
T  26449635 acctgcttcttctgctttctctctgccttagtgctctctgacaaactaggatagtgttgctca 26449697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 713 - 826
Target Start/End: Original strand, 19407845 - 19407958
Alignment:
Q  713 caactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacc 812  Q
    ||||||| |||||||||  | ||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| | ||||    
T  19407845 caactatactgtatctgctagggcggctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacc 19407944  T
Q  813 tgcttcttcttctt 826  Q
    ||||||||||||||    
T  19407945 tgcttcttcttctt 19407958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 475 - 592
Target Start/End: Original strand, 7543832 - 7543949
Alignment:
Q  475 attttttatttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatc 574  Q
    ||||||| ||| || || |||||| ||||||||||||||| |||||||||||| |||||||||||||| ||||  | |||||| ||||||||||  || |    
T  7543832 atttttttttttttaataaaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaac 7543931  T
Q  575 cagatctatcccaagaaa 592  Q
    | | ||||||||||||||    
T  7543932 cgggtctatcccaagaaa 7543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 487 - 568
Target Start/End: Original strand, 19407632 - 19407713
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaag 568  Q
    ||||| |||| | ||||||||||||||| |||||||||||| |||||||||||||| ||||  |||||||| ||||||||||    
T  19407632 tttatcaaagtaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagtgtaaaacctatgaaaag 19407713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 750 - 874
Target Start/End: Complemental strand, 33191359 - 33191235
Alignment:
Q  750 cccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctctgccttattgctctcag 849  Q
    ||||| |||||||||||||||||  | |||||||||||||||  |||| |||||||   ||| || ||||||||| || ||||||| ||| ||||| | |    
T  33191359 cccttctgggcacgggtcctcatgtcagctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcattttctctgctttagtgctccccg 33191260  T
Q  850 atagacttggatagtgctgctcaaa 874  Q
    ||||  |||||||||||||||||||    
T  33191259 ataggtttggatagtgctgctcaaa 33191235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 516 - 657
Target Start/End: Complemental strand, 26180443 - 26180301
Alignment:
Q  516 ggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatcccaagaaaggagaagacctgaggaaa-agga 614  Q
    ||||||||||||  ||||||| |||||| |||||| ||||||| || |||||| ||| |  ||||||||| || |||||| ||| |||||| ||| ||      
T  26180443 ggagaggcctgaaacaatacatcagagtcacaatgggtaaaatatacgaaaagaaaaactggatctatcctaaaaaaggaaaagtcctgagaaaagagat 26180344  T
Q  615 gtcaaagaccaccatagtacatagaaactaacaactgctacaa 657  Q
    |||||||||||||||  |||  | |||||||||||||||||||    
T  26180343 gtcaaagaccaccattatacggaaaaactaacaactgctacaa 26180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 644
Target Start/End: Original strand, 29132186 - 29132344
Alignment:
Q  487 tttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatctatccc 586  Q
    ||||| |||||| ||| ||||||||||| | |||| | ||| ||||||||  ||||| || | ||||||||  ||||||||| ||| ||  |||||||||    
T  29132186 tttatcaaagcaataacatataaaagacagaagagacatgaaccaatacagtagagtcacgaagtgtaaaacttatgaaaagaaaaaccgaatctatccc 29132285  T
Q  587 aagaaaggagaagacctgaggaaa-aggagtcaaagaccaccatagtacatagaaacta 644  Q
    ||||||||| |||  || |  ||| ||| ||||||||| ||||| ||||||| ||||||    
T  29132286 aagaaaggaaaagttctaaaaaaagaggtgtcaaagacgaccattgtacataaaaacta 29132344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 594
Target Start/End: Complemental strand, 34548266 - 34548156
Alignment:
Q  483 tttatttattaaagcactaaaatataaaagaccggagaggcctgagccaatacaacagagttacaatgtgtaaaatctatgaaaagtaaatccagatcta 582  Q
    |||||| || |||||| |||||||||||||   ||||||| |||| |||||||| |||||| ||   ||| |||||||||||||||  ||  | ||||||    
T  34548266 tttattgatcaaagcagtaaaatataaaagta-ggagaggtctgaaccaatacatcagagtcacttagtgaaaaatctatgaaaagagaaatcggatcta 34548168  T
Q  583 tcccaagaaagg 594  Q
    ||||||||||||    
T  34548167 tcccaagaaagg 34548156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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