View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_high_11 (Length: 397)
Name: NF13739_high_11
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 46754710 - 46754351
Alignment:
| Q |
19 |
atatacacaacatacacaagtcaaagcacctgtctagcaaattgttagccatctaatgatttactctcctatgatgatgataataaccacattacaatcg |
118 |
Q |
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| T |
46754710 |
atatacacaacatacacaagtcaaagcacctgtctagcaaattgttagccatctactgatttactctcctatgatgat---aataaccacattacaatcg |
46754614 |
T |
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| Q |
119 |
gcaaaagacacttttgtccaagaaccaaaccaaacctcacatgctagagtcagtatgttctgatgaggaagaaacaaaaaacacatgggataaaatatct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46754613 |
gcaaaagacacttttgtccaagaaccaaaccaaacctcacatgctagagtcagtatgttctgatgaggaagaaacaaaaaacacatgggataaaatatct |
46754514 |
T |
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| Q |
219 |
gcagacaaaggaaagggcaccaccgtaattttaatcatcacacatctctcatctatatactttatagannnnnnnctttcaataaaggaaagccataacg |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46754513 |
gcagacaaaggaaagggcaccaccgtaattttactcatcacacatctctcatctatatactttatagatttttttctttcaataaaggaaagccataacg |
46754414 |
T |
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| Q |
319 |
gaggggtcatttggtctctaaactcaaaccatatatactctacacaaacttgcattgcatttt |
381 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46754413 |
gaggggtcatttgatctctaaactcaaaccatatatactctacacaaacttgcattgcatttt |
46754351 |
T |
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