View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13739_high_12 (Length: 393)

Name: NF13739_high_12
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13739_high_12
NF13739_high_12
[»] chr7 (2 HSPs)
chr7 (18-381)||(3597106-3597469)
chr7 (198-256)||(37358574-37358632)
[»] chr3 (1 HSPs)
chr3 (72-129)||(13363211-13363268)
[»] chr8 (3 HSPs)
chr8 (297-360)||(29512905-29512968)
chr8 (284-345)||(44140994-44141055)
chr8 (316-360)||(19649260-19649304)
[»] scaffold0009 (1 HSPs)
scaffold0009 (316-360)||(199360-199404)
[»] chr2 (2 HSPs)
chr2 (316-360)||(23377579-23377623)
chr2 (273-339)||(33019096-33019162)
[»] chr6 (2 HSPs)
chr6 (273-339)||(4910987-4911053)
chr6 (273-337)||(4908041-4908105)
[»] chr4 (2 HSPs)
chr4 (273-331)||(21691160-21691218)
chr4 (284-360)||(50061558-50061633)
[»] chr1 (3 HSPs)
chr1 (279-339)||(2099627-2099687)
chr1 (279-339)||(30557587-30557647)
chr1 (273-305)||(34875063-34875095)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 3597469 - 3597106
Alignment:
Q  18 gtttgcttatagtatacaaatttgtaggggtacttcctcactccctctggatagttacaagttaatcaatgtgtgattgttggataagcgcaagatcaag 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||    
T  3597469 gtttgcttatagtatacgaatttgtaggggtacttcctcactccctctggatagttacaagttaaccaatgtgtgattttcggataagcgcaagatcaag 3597370  T
Q  118 tactatatcagtgaggtatgtgttttagagatggcttttttggtttgtaatgcctgaactttgattttgctattaatggtcatagcatgttcgactggtt 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  3597369 tactatatcagtgaggtatgtgttttagagatggctattttggtttgtaatgcctgaactttgattttgttattaatggtcatagcatgttcaactggtt 3597270  T
Q  218 ttgtgttgctatctttggaatgtaaatcgtataatataatgtttttaagaatcaattttgcatgaatttatccaaagaaaaatcacttatagtgaaaatc 317  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  3597269 ttgtgttgctatctttggaatgtaaatcatataatataatgtttttaaaaatcaattttgcatgaatgtatctaaagacaaatcacttatagtgaaaatc 3597170  T
Q  318 acttttaaccaaaattaattcttcccaccgtacaaccaaacacgcacgcaaataggttctggta 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597169 acttttaaccaaaattaattcttcccaccgtacaaccaaacacgcacgcaaataggttctggta 3597106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 37358632 - 37358574
Alignment:
Q  198 catagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataa 256  Q
    ||||||| ||||  ||||||||||||||||||| ||| |||||||||  ||||||||||    
T  37358632 catagcaggttcagctggttttgtgttgctatcgttgtaatgtaaattatataatataa 37358574  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 13363268 - 13363211
Alignment:
Q  72 ttacaagttaatcaatgtgtgattgttggataagcgcaagatcaagtactatatcagt 129  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||    
T  13363268 ttacaagttaaccaatatgtgattgttggataagcccaagatcaagtactatatcagt 13363211  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 29512905 - 29512968
Alignment:
Q  297 aaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 360  Q
    |||||| || |||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||    
T  29512905 aaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacac 29512968  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 44141055 - 44140994
Alignment:
Q  284 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccac 345  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| |||||    
T  44141055 tttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccac 44140994  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 19649260 - 19649304
Alignment:
Q  316 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 360  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||    
T  19649260 tcacttttaaccaaaatcaattttttccaccgcacaaccaaacac 19649304  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 199404 - 199360
Alignment:
Q  316 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 360  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||    
T  199404 tcacttttaaccaaaatcaattctttccaccgcacaaccaaacac 199360  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 23377579 - 23377623
Alignment:
Q  316 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 360  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  23377579 tcacttttaaccaaaattaattttttccaccgcacaaccaaacac 23377623  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 33019162 - 33019096
Alignment:
Q  273 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 339  Q
    |||| |||||||  ||||||| | ||||||||| |||| | ||||||||||||||||||| ||||||    
T  33019162 ttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 4910987 - 4911053
Alignment:
Q  273 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 339  Q
    |||| ||| ||| |||||||| | ||||||||| |||| | ||| ||||||||||||||||||||||    
T  4910987 ttttacataaatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 4908041 - 4908105
Alignment:
Q  273 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaatt 337  Q
    |||| ||||| |||||||||| | ||||||||| |||  | ||||||||||||||||||| ||||    
T  4908041 ttttacatgattttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 21691218 - 21691160
Alignment:
Q  273 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaa 331  Q
    |||| ||||||| |||||||| | ||||||||| |||| | ||||||||||||||||||    
T  21691218 ttttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 50061633 - 50061558
Alignment:
Q  284 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 360  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| ||||| | || |||||||||    
T  50061633 tttatccaaacacaattcactt-tagtcagaatcacttttaaccaaaatcaattctccccactgaactaccaaacac 50061558  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 2099687 - 2099627
Alignment:
Q  279 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 339  Q
    |||||| |||||||| | ||||||||| || | ||||| ||||||||||||||| ||||||    
T  2099687 atgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattct 2099627  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 30557587 - 30557647
Alignment:
Q  279 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 339  Q
    |||||| |||||||| | ||||||||| |||| | | ||||||||||||||||| ||||||    
T  30557587 atgaatgtatccaaacacaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 34875095 - 34875063
Alignment:
Q  273 ttttgcatgaatttatccaaagaaaaatcactt 305  Q
    ||||||||||||||||||||||| |||||||||    
T  34875095 ttttgcatgaatttatccaaagataaatcactt 34875063  T

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