View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13739_high_18 (Length: 321)

Name: NF13739_high_18
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13739_high_18
NF13739_high_18
[»] chr3 (47 HSPs)
chr3 (1-309)||(17941625-17941933)
chr3 (116-309)||(18015880-18016073)
chr3 (116-309)||(19461318-19461511)
chr3 (96-309)||(19424382-19424595)
chr3 (116-309)||(18115751-18115944)
chr3 (116-308)||(19413970-19414162)
chr3 (116-297)||(17941524-17941702)
chr3 (97-309)||(14896411-14896623)
chr3 (96-303)||(17727708-17727914)
chr3 (96-303)||(19028937-19029143)
chr3 (97-309)||(18146597-18146809)
chr3 (116-309)||(19399494-19399687)
chr3 (123-309)||(19333802-19333988)
chr3 (116-308)||(19375480-19375672)
chr3 (116-310)||(19351180-19351374)
chr3 (102-275)||(18022574-18022747)
chr3 (116-309)||(19436816-19437009)
chr3 (116-309)||(19392935-19393128)
chr3 (97-308)||(25462817-25463028)
chr3 (126-309)||(17949624-17949807)
chr3 (127-309)||(18108236-18108418)
chr3 (116-308)||(19380679-19380871)
chr3 (97-303)||(16676986-16677192)
chr3 (122-309)||(18103222-18103397)
chr3 (116-294)||(18164942-18165120)
chr3 (96-237)||(24493511-24493652)
chr3 (97-212)||(18144009-18144124)
chr3 (44-91)||(18144162-18144209)
chr3 (116-191)||(19436654-19436729)
chr3 (1-93)||(18103305-18103400)
chr3 (2-93)||(17941842-17941936)
chr3 (43-99)||(19424548-19424604)
chr3 (43-90)||(19351326-19351373)
chr3 (1-102)||(14896399-14896503)
chr3 (43-93)||(19333941-19333991)
chr3 (43-92)||(17949760-17949809)
chr3 (43-92)||(18108371-18108420)
chr3 (43-95)||(25462982-25463034)
chr3 (242-309)||(18144141-18144208)
chr3 (43-89)||(19414116-19414162)
chr3 (43-93)||(19436962-19437012)
chr3 (43-93)||(19461464-19461514)
chr3 (43-92)||(18115897-18115946)
chr3 (27-91)||(18146743-18146810)
chr3 (43-99)||(16677151-16677207)
chr3 (43-91)||(19393081-19393129)
chr3 (277-309)||(19407112-19407144)
[»] scaffold0640 (1 HSPs)
scaffold0640 (96-309)||(5169-5382)
[»] chr8 (1 HSPs)
chr8 (116-309)||(8459262-8459455)
[»] chr4 (2 HSPs)
chr4 (99-308)||(2710598-2710807)
chr4 (116-297)||(15532137-15532318)
[»] scaffold2156 (1 HSPs)
scaffold2156 (96-237)||(21-162)
[»] chr6 (1 HSPs)
chr6 (116-297)||(13666911-13667094)
[»] scaffold0648 (1 HSPs)
scaffold0648 (176-309)||(4124-4257)
[»] scaffold0274 (1 HSPs)
scaffold0274 (176-309)||(3594-3727)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 17941625 - 17941933
Alignment:
Q  1 aatctcacttatctttaccttcgggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  17941625 aatctcacttatctttaccttcgggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagatgccttgatctctctcaaaact 17941724  T
Q  101 acttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  17941725 acttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggtt 17941824  T
Q  201 ttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17941825 ttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacac 17941924  T
Q  301 cttcatctc 309  Q
    ||| |||||    
T  17941925 ctttatctc 17941933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 18015880 - 18016073
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||   |||||  |||||||| |||||||||||||||||||||||||||||||    
T  18015880 catctgttgagtatttgaatttgccttcacttgtaactctttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 18015979  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    ||||||||| | ||||||||||    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  18015980 agatctcacctctcttgacctttcatatagcaatatacatggtgagataccttctagcttgctaaaccttcaaaatttgagacaacttcatctc 18016073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 19461318 - 19461511
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||| |||||||| || ||||||||||||||||||||||||||||    
T  19461318 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaa 19461417  T
Q  216 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||||||||||||||||||| ||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  19461418 agatctcacttatcttgacctttcac-agagtaatatatacggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctc 19461511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 96 - 309
Target Start/End: Original strand, 19424382 - 19424595
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 195  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||| |||  |||||||   |||||| || ||||| || ||||||||    
T  19424382 aaacaacttcatgatcaacccatcaattgagtatttgaatttgtcttcaattgtaacacttgatctttctttcaacaatttcgcctctcatttacctgat 19424481  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    ||||||||||||||||||||||||||||| ||||||   |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19424482 gggttttttaatctcaccaaagatctcacctatcttagacttcaccagagcaatatacatggtgggataccttcaagcttgctaaaccttcaaaatttga 19424581  T
Q  296 gacaccttcatctc 309  Q
     | ||||| |||||    
T  19424582 cataccttgatctc 19424595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 18115751 - 18115944
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||  |||||||| || |||||||||||||||||||||| |||||    
T  18115751 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaa 18115850  T
Q  216 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18115851 agatctcacttatcttgacctttcac-agagtaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctc 18115944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 19413970 - 19414162
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||| ||||||||||||||||| |||||||||||  |||||||   |||||  |||||||| |||||||||||||||||||||||||||||||    
T  19413970 catctgttgagcatttgaatttgtcttcaattgtaactcttgatctttcttacaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 19414069  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 308  Q
    ||||||||| | ||||||||||    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19414070 agatctcacctctcttgacctttcatatagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 19414162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 116 - 297
Target Start/End: Original strand, 17941524 - 17941702
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17941524 catctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatttcacctcttatatacctgatgggttttttaatctcaccaa 17941623  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga 297  Q
    | |||||||||||||| ||||||  | |||||||||| |   ||| |||||||||||||| ||||||||||| || ||||||    
T  17941624 aaatctcacttatctttaccttcgggggagcaatatata---tgatataccttcaagcttactaaaccttcagaaattgaga 17941702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 97 - 309
Target Start/End: Complemental strand, 14896623 - 14896411
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 196  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||  |||||||  ||||||  |||||||| || | ||  |||    
T  14896623 aacaacttcatgttcaactcatcttttgagtatttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctcatttgccaaatg 14896524  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgag 296  Q
    |||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  14896523 ggttttttaatctcacaaaaaatctcacctatctttaccttcatgaaagcaatatacatggtgagataccttcaagcttgctaaaccttcaaattttaag 14896424  T
Q  297 acaccttcatctc 309  Q
    ||||||| |||||    
T  14896423 acaccttgatctc 14896411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 96 - 303
Target Start/End: Complemental strand, 17727914 - 17727708
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 195  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| |||||| |  ||| || |||||||| |  | |||| |    
T  17727914 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggt 17727816  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |    
T  17727815 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaa 17727716  T
Q  296 gacacctt 303  Q
     |||||||    
T  17727715 cacacctt 17727708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 96 - 303
Target Start/End: Complemental strand, 19029143 - 19028937
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 195  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| |||||| |  ||| || |||||||| |  | |||| |    
T  19029143 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggt 19029045  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |    
T  19029044 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaa 19028945  T
Q  296 gacacctt 303  Q
     |||||||    
T  19028944 cacacctt 19028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 97 - 309
Target Start/End: Original strand, 18146597 - 18146809
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 196  Q
    ||||||||||| || | | ||||||||| |||||||||||||||||||||| ||||||||  ||||||  |||| ||| | |||||| || |||||||||    
T  18146597 aacaacttcataattaacacatctattgggtatttgaatttgtcttcacttataactcttgatctttcaggaaataatttaacctctcatttacctgatg 18146696  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgag 296  Q
    ||| ||||||||| ||||||||| |||  ||||||  |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18146697 ggtattttaatcttaccaaagatatcaactatcttagccttgaggagagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgag 18146796  T
Q  297 acaccttcatctc 309  Q
    ||||||| |||||    
T  18146797 acaccttaatctc 18146809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 19399494 - 19399687
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||| |  |||||  |||||| | ||||||||||||||||||||||| |||||||    
T  19399494 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 19399593  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    ||||||||| | |||| ||||| || | | ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  19399594 agatctcacctgtctttaccttgacaataacaatatatatggtgagataccttcaagcttgctaacccttcaaaatttgaaacaccttgatctc 19399687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 123 - 309
Target Start/End: Original strand, 19333802 - 19333988
Alignment:
Q  123 tgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctc 222  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||||  | |||||| || ||| ||||||||||||||||||  |||||||||||    
T  19333802 tgagtatttgaatttgtcttcaattgtaactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatctttccaaagatctc 19333901  T
Q  223 acttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |  ||||| ||||||     || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19333902 aagtatctcgacctttcttggaacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 19333988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 19375480 - 19375672
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||| |||||||||||||||| |||||| ||||  |||||||  ||||||| |||||| | || ||||||||||||||||||||||||||||    
T  19375480 catctgttgagtttttgaatttgtcttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaa 19375579  T
Q  216 agatctcacttatcttgaccttcacga-gagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 308  Q
    |||| |||| ||||||||||||  ||| ||  |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  19375580 agatatcacctatcttgacctt-gcgatgaataatatatatggtgagataccttcaagcttgctaaaccttccaaatttgagacaacttgatct 19375672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 116 - 310
Target Start/End: Original strand, 19351180 - 19351374
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||| | |||| ||  ||| || | || |||| |||||||||||||||||||||||    
T  19351180 catctgttgagtatttgaatttgtcttcacttgtaactcttgatctttttcgaaataacttcaactttaatttaccagatgggttttttaatctcaccaa 19351279  T
Q  216 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctca 310  Q
    |||||||||||||||| ||| ||||| | || |||||| ||||| |||||||||||||||| ||||||||||||||  ||||||||||| ||||||    
T  19351280 agatctcacttatcttcacctttcac-aaagtaatatatatggtaagataccttcaagcttactaaaccttcaaaaactgagacaccttgatctca 19351374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 275
Target Start/End: Original strand, 18022574 - 18022747
Alignment:
Q  102 cttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttt 201  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||| || ||||  ||||||||    
T  18022574 cttcatgatcaacccatctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggttt 18022673  T
Q  202 tttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 275  Q
    |||||||||||||||||| |||  ||||||| |||    |||||||||||||||||||||||||||||||||||    
T  18022674 tttaatctcaccaaagatatcaactatcttgtcctcttagagagcaatatacatggtgagataccttcaagctt 18022747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 19436816 - 19437009
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctaga-aacaatatcacctcttatatacctgatgggttttttaatctcacca 214  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||| ||| ||| || |||||||| |  |||| ||||||||||||||||||||||    
T  19436816 catctattcagtatttaaatttgtcttcacttgtaactctttatctttc-agataacgatttcacctctcacttaccggatgggttttttaatctcacca 19436914  T
Q  215 aagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||||||||| | |||| |||||      | |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  19436915 aagatctcacctctctttacctttcgtttaacaatattcatggggagataccttctagcttgctaaaccttcaaaatttgagacaccttgatctc 19437009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 19392935 - 19393128
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||  |||||||| |||||||||||||||  ||||     
T  19392935 catcttttgagtatttgaatttgtcttcacttgtaactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatcgtaccac 19393034  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    | ||  ||| || ||| ||||| | |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||    
T  19393035 atatgccacctaccttcaccttaaggagagcaacatatatggtgagataccttcaagtttgctaaaccttcaaaatttgagataccttaatctc 19393128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 97 - 308
Target Start/End: Original strand, 25462817 - 25463028
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 196  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||| ||| ||||||||  |||||||   |||||  |||||||| || |||||||||    
T  25462817 aacaacttcatgaccaaatcatctattgggtatttgaatttgtcttcgcttttaactcttgatctttcttacaacaacttcacctctcatttacctgatg 25462916  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgag 296  Q
    | |||||||||||| | |||||| |||  ||||||||||||      |  ||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  25462917 gtttttttaatctctcaaaagatttcatgtatcttgacctttcatttaataatgtacatggtgacataccttcaagcttgctaaaccttcaaaatttgag 25463016  T
Q  297 acaccttcatct 308  Q
    ||||||| ||||    
T  25463017 acaccttgatct 25463028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 17949624 - 17949807
Alignment:
Q  126 gtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcact 225  Q
    |||||||||||| ||||||||||||||||||| ||||  |  ||||||  |||||||  || ||||  |||||||||| ||||||||||||||| ||||     
T  17949624 gtatttgaatttatcttcacttgtaactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagatatcacc 17949723  T
Q  226 tatcttgacctt-cacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    | |||||||||| ||| | |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17949724 tctcttgaccttgcactaaat-aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 17949807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 309
Target Start/End: Original strand, 18108236 - 18108418
Alignment:
Q  127 tatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcactt 226  Q
    ||||||||||||||||||||||||||||||  ||||  |  ||||||  |||||||  || ||||  |||||||||| ||||||||||| ||| |||| |    
T  18108236 tatttgaatttgtcttcacttgtaactcttaatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaatgatatcacct 18108335  T
Q  227 atcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
     ||||||||||     ||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18108336 ctcttgaccttgcgctgaataatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 18108418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 19380679 - 19380871
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||||||||||||||||||||   ||||||| |||||||  |||||||| |  |||| |||||||| ||||||||||| ||    
T  19380679 catctgttgagtatttgaatttgtcttcacttgtaactctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcacgaa 19380778  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 308  Q
    |||| |||  | ||||    || | |  ||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||| ||||    
T  19380779 agatatcaactctcttagatttgagggtagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatct 19380871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 303
Target Start/End: Original strand, 16676986 - 16677192
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 196  Q
    |||||||||||| ||| ||||||||||| |||||||||||  |||||| |||||||||||  |||||||   |||||| | |||| | |  |||   | |    
T  16676986 aacaacttcatgctcaactcatctattgggtatttgaattcctcttcaattgtaactcttgatctttcttacaacaatttaacctttcagttactaaacg 16677085  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgacctt-cacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    ||||||| ||||||||||||||| |||   ||||||||||| || | ||  |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  16677086 ggtttttaaatctcaccaaagatatcaagcatcttgacctttcatg-gaataatatacatggtgagataccttcaagcttgttaaaccttcaacatttga 16677184  T
Q  296 gacacctt 303  Q
    ||||||||    
T  16677185 gacacctt 16677192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 122 - 309
Target Start/End: Original strand, 18103222 - 18103397
Alignment:
Q  122 ttgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatct 221  Q
    |||||||||||||||||| |||| ||||||| |||  ||||||   ||||||| |||| | | || ||| ||||||||||||||||||||||            
T  18103222 ttgagtatttgaatttgtattcaattgtaacccttgatctttcagaaaacaatttcacttttcatttacatgatgggttttttaatctcacc-------- 18103313  T
Q  222 cacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
        |||||| |||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18103314 ----tatcttcaccttcgcgataacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc 18103397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 18164942 - 18165120
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| || ||||| |||||||||||||| |||||||||||  |||||||   ||| || |||||||| |  ||| |||||| |||||||||||||||||    
T  18164942 catcttttaagtatgtgaatttgtcttcaattgtaactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcaccaa 18165041  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttg 294  Q
    |||| |||  | ||||  ||||   | || ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  18165042 agatatcaactttcttagcctttcagggaacaatataaatggtgagataccttcaagcttgctaaaacttcaaaatttg 18165120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 24493652 - 24493511
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 195  Q
    ||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||  |||||||  ||||||  ||| |||| |  ||||  ||    
T  24493652 aaacaacttcatgatcaactcattttttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaat 24493553  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgacctt 237  Q
    |  |||||||| |||||||||||| |||| ||||||| ||||    
T  24493552 gcattttttaacctcaccaaagatatcacctatcttggcctt 24493511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 18144009 - 18144124
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 196  Q
    |||||||| ||||||| | ||| |||  |||||||||||||||| ||| |||||||||||  |||||||  ||||||  |||||||| || ||||||||     
T  18144009 aacaacttaatgatcaacccatatatcaagtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttacctgata 18144108  T
Q  197 ggttttttaatctcac 212  Q
    ||||||||||||||||    
T  18144109 ggttttttaatctcac 18144124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 18144162 - 18144209
Alignment:
Q  44 taccttcaagcttactaaaccttcagaaattgagataccttgatctct 91  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  18144162 taccttcaagcttgctaaaccttcagaaatcgagataccttgatctct 18144209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 19436654 - 19436729
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacc 191  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  ||||||| |||||||  ||||||||||| ||||    
T  19436654 catctgttgagtatttcaatttatcttcacttgtaactcttgatctttctggaaacaaattcacctcttatttacc 19436729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18103305 - 18103400
Alignment:
Q  1 aatctcacttatctttaccttcgggggagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||| |||||| ||||||| |  | ||||||||||| |   |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  18103305 aatctcacctatcttcaccttcgcgataacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 18103400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 17941842 - 17941936
Alignment:
Q  2 atctcacttatctttaccttcgggggagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||||||||| ||||||  | |||||||||| ||| |   |||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  17941842 atctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctttatctctct 17941936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 19424548 - 19424604
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 99  Q
    |||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||    
T  19424548 ataccttcaagcttgctaaaccttcaaaatttgacataccttgatctctctgaaaac 19424604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 19351326 - 19351373
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctc 90  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  19351326 ataccttcaagcttactaaaccttcaaaaactgagacaccttgatctc 19351373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14896503 - 14896399
Alignment:
Q  1 aatctcacttatctttaccttcgggggagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaa 97  Q
    |||||||| |||||||||||||  |  ||||||||| ||| |   |||||||||||||| ||||||||||| |  || ||| |||||||||||||| |||    
T  14896503 aatctcacctatctttaccttcatgaaagcaatatacatggtgagataccttcaagcttgctaaaccttcaaattttaagacaccttgatctctctaaaa 14896404  T
Q  98 acaac 102  Q
    |||||    
T  14896403 acaac 14896399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 19333941 - 19333991
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  19333941 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 19333991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 17949760 - 17949809
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 92  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  17949760 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 17949809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 18108371 - 18108420
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 92  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  18108371 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 18108420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 25462982 - 25463034
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctca 95  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||| |||||    
T  25462982 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatctca 25463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 18144141 - 18144208
Alignment:
Q  242 agagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||| || | |||| ||||| |||||    
T  18144141 agagtaatatatatggtgacttaccttcaagcttgctaaaccttcagaaatcgagataccttgatctc 18144208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 19414116 - 19414162
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatct 89  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||    
T  19414116 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 19414162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 19436962 - 19437012
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||| ||||| ||||||||||| || |||||| ||||||||||||||    
T  19436962 ataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctct 19437012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 19461464 - 19461514
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  19461464 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctct 19461514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 18115897 - 18115946
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 92  Q
    |||||||||||||| ||||||||||| || |||||| ||||| |||||||    
T  18115897 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctc 18115946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 18146743 - 18146810
Alignment:
Q  27 gagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 91  Q
    |||||||||||||| |   |||||||||||||| ||||||||||| || |||||| ||||| ||||||    
T  18146743 gagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctct 18146810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 16677151 - 16677207
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 99  Q
    ||||||||||||||  ||||||||||  | |||||| |||||||| |||||||||||    
T  16677151 ataccttcaagcttgttaaaccttcaacatttgagacaccttgatgtctctcaaaac 16677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 19393081 - 19393129
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 91  Q
    ||||||||||| || ||||||||||| || |||||||||||| ||||||    
T  19393081 ataccttcaagtttgctaaaccttcaaaatttgagataccttaatctct 19393129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 19407112 - 19407144
Alignment:
Q  277 ctaaaccttcaaaatttgagacaccttcatctc 309  Q
    ||||||||||||||||||||||||||| |||||    
T  19407112 ctaaaccttcaaaatttgagacaccttgatctc 19407144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 96 - 309
Target Start/End: Original strand, 5169 - 5382
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 195  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  | |||||  || ||||  ||    
T  5169 aaacaacttcatgatcaaaccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 5268  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    |||||||||||||| ||||||||| |||| | ||||||||||    | |  |||||| |||| ||||||||||| ||| |||||||||||||||||||||    
T  5269 gggttttttaatctaaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggcgagataccttctagcatgctaaaccttcaaaatttga 5368  T
Q  296 gacaccttcatctc 309  Q
    |||| ||| |||||    
T  5369 gacatcttgatctc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 8459262 - 8459455
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||  |||| |||  | ||||| |||||||||||||||| |||||    
T  8459262 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatctgaccaa 8459361  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||| |||| ||||||||||||   |   || ||||| |||| ||||| |||||||||||| || |||||| |||||||||||||||| |||||    
T  8459362 agatatcacctatcttgacctttcggtttgccatatatatggcgagatgccttcaagcttgttataccttccaaatttgagacaccttgatctc 8459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 99 - 308
Target Start/End: Complemental strand, 2710807 - 2710598
Alignment:
Q  99 caacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatggg 198  Q
    |||||||||||||| | | |||||||  ||||||||||||||||||||| ||||||||   |||||| | |||||  ||||||||  | ||||  |||||    
T  2710807 caacttcatgatcaacccgtctattgcatatttgaatttgtcttcacttataactcttgaactttcttggaacaacttcacctctcctttaccaaatggg 2710708  T
Q  199 ttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagac 298  Q
    |||||||||||||||||| |  |||  ||||||||||||    | |||||||||||||||||||||||||| |||||| |||| |||| |||||||||||    
T  2710707 ttttttaatctcaccaaacacatcaactatcttgacctttcatatagcaatatacatggtgagataccttctagcttgttaaagcttcgaaatttgagac 2710608  T
Q  299 accttcatct 308  Q
    | ||| ||||    
T  2710607 aactttatct 2710598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 297
Target Start/End: Original strand, 15532137 - 15532318
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||| | |||||  ||| |  | || ||||  ||||||||||||||||  ||||    
T  15532137 catctatcgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcagccatcatttaccaaatgggttttttaatctttccaa 15532236  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga 297  Q
    | |||||| |||||||||||||    | |  ||||||| || ||||||||||||||| |||||||| |||||||||||||||    
T  15532237 atatctcaattatcttgacctttcaaaaaataatatacttgatgagataccttcaagtttgctaaatcttcaaaatttgaga 15532318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 162 - 21
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 195  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  | |||||  || ||||  ||    
T  162 aaacaacttcatgatcaatccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 63  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgacctt 237  Q
    |||||||||||||| ||||||||| |||| | ||||||||||    
T  62 gggttttttaatctaaccaaagatatcacctctcttgacctt 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 297
Target Start/End: Complemental strand, 13667094 - 13666911
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||| || |||||||||  |||||||  ||||||  |||||||| |||||||| ||| ||||||||||||||||||    
T  13667094 catctcttgagtatttgaatttgtcttcgctggtaactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcaccaa 13666995  T
Q  216 agatctcacttatcttgacc-ttcacgagagca--atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga 297  Q
    | |||||||   | |||||| ||||| | || |  ||||| ||||| | |||||||||| |||||||||| |||||| |||||||    
T  13666994 aaatctcaccactgttgacctttcac-atagtaatatatatatggtaaaataccttcaaccttgctaaacattcaaactttgaga 13666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 4257 - 4124
Alignment:
Q  176 tcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 275  Q
    |||||||| || ||||  |||||||||||||||||||||||||| |||| | ||||||||||    | |  |||||| ||||||||||||||   |||||    
T  4257 tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt 4158  T
Q  276 gctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||||||||||||||||||||||| ||| |||||    
T  4157 gctaaaccttcaaaatttgagacatcttgatctc 4124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 3727 - 3594
Alignment:
Q  176 tcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 275  Q
    |||||||| || ||||  |||||||||||||||||||||||||| |||| | ||||||||||    | |  |||||| ||||||||||||||   |||||    
T  3727 tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt 3628  T
Q  276 gctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||||||||||||||||||||||| ||| |||||    
T  3627 gctaaaccttcaaaatttgagacatcttgatctc 3594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University