View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_high_20 (Length: 266)
Name: NF13739_high_20
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_high_20 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 16456 - 16658
Alignment:
| Q |
19 |
gaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |
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| T |
16456 |
gaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatg |
16555 |
T |
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| Q |
119 |
tgaatgtttgggctggaactgcttctctacttcctctctttggtgcattcattgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16556 |
tgaatatttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgattcttttcttggacgctatcacacaatcatacttgcttctct |
16655 |
T |
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| Q |
219 |
tat |
221 |
Q |
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||| |
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| T |
16656 |
tat |
16658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 11778999 - 11779195
Alignment:
| Q |
25 |
gcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatg |
124 |
Q |
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||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |||||||||| |
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| T |
11778999 |
gcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatg |
11779098 |
T |
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| Q |
125 |
tttgggctggaactgcttctctacttcctctctttggtgcattcattgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttat |
221 |
Q |
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| T |
11779099 |
tttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattcttttcttggacgctatcacacaatcatacttgcttctcttat |
11779195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 11797855 - 11798054
Alignment:
| Q |
19 |
gaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatg |
118 |
Q |
| |
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||||| ||||||||| |||||||| ||| ||| | || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797855 |
gaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatg |
11797954 |
T |
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| Q |
119 |
tgaatgtttgggctggaactgcttctctacttcctctctttggtgcattcattgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11797955 |
tgaatgtttgggttggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatacttgcttctct |
11798054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 11696056 - 11696213
Alignment:
| Q |
61 |
ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggctggaactgcttctctacttcctctctttg |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11696056 |
ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttg |
11696155 |
T |
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| Q |
161 |
gtgcattcattgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
218 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
11696156 |
gtgctttcattgctgattcttttcttggacgctaccgcacaatcatgcttgcttctct |
11696213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 11675918 - 11676117
Alignment:
| Q |
19 |
gaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatg |
118 |
Q |
| |
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||||| ||||||||| |||||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
11675918 |
gaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatg |
11676017 |
T |
|
| Q |
119 |
tgaatgtttgggctggaactgcttctctacttcctctctttggtgcattcattgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
218 |
Q |
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||||| ||||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11676018 |
tgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctct |
11676117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 11684197 - 11684396
Alignment:
| Q |
19 |
gaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatg |
118 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
11684197 |
gaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatg |
11684296 |
T |
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| Q |
119 |
tgaatgtttgggctggaactgcttctctacttcctctctttggtgcattcattgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
218 |
Q |
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||||| ||||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11684297 |
tgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctct |
11684396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 11701811 - 11702013
Alignment:
| Q |
19 |
gaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatg |
118 |
Q |
| |
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||||| ||||||||| |||||||| ||| ||| | || || |||||||||||||||||||| ||||||||||| |||||||||| ||||||| | |||| |
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| T |
11701811 |
gaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatg |
11701910 |
T |
|
| Q |
119 |
tgaatgtttgggctggaactgcttctctacttcctctctttggtgcattcattgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
218 |
Q |
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| ||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11701911 |
taaatgtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
11702010 |
T |
|
| Q |
219 |
tat |
221 |
Q |
| |
|
||| |
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|
| T |
11702011 |
tat |
11702013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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