View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_high_6 (Length: 512)
Name: NF13739_high_6
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 21 - 496
Target Start/End: Complemental strand, 15239540 - 15239065
Alignment:
| Q |
21 |
ccaatcacttaaatcaagatttttctccaactcatccaaaacagctcttcctccagcatgaatacaaaagtgctcaaaagctaatttaaaatcaggaatg |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15239540 |
ccaatcacttaaatcaagatttttctccaactcatccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcaggaatg |
15239441 |
T |
|
| Q |
121 |
tatggttttattttcatcttgaagatttttcgcgcaaccaatgtcccgaaaaataagagctgttctgacataggtagaactaatggtcctaatgttgtga |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
15239440 |
tatggttttattttcatcttgaagatttttcgcgcaaccaatgtcccgaaaaataagagctgttccgacataggtaggactaatggtcctaatgttgtga |
15239341 |
T |
|
| Q |
221 |
tgtttgttttgagtgcttctccggcaacagccattaggtcttttgagagtgatacaccgacttgctttgtgtcgtcttcttcttgaaagacacagccgta |
320 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15239340 |
tgtttgttttgagtgcttctccggcaacagccattaggtcttttgagagtgatacaccgacttgctttgtgtcgtcttcttcttgaaagacgcagccgta |
15239241 |
T |
|
| Q |
321 |
ggatttgttgtctgcacctttgtgcgttcggacggtgtggactagttggtattttgatcggaggcggtcgcgtggcttgttggagaggagaactgctgct |
420 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15239240 |
ggatttgttgtctgcacctttgtgcgttcggacggtgtggactagttggtattttgatcggaggcggtcgcgtggcttgttggagaggagaactgctgct |
15239141 |
T |
|
| Q |
421 |
cctcccattctaaagagacaatttggcactagcattgatctgtcgttgccgaaataccagtttagtgttatgttct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15239140 |
cctcccattctaaagagacaatttggcactagcattgatctgtcgttgccgaaataccagtttagtgttatgttct |
15239065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 21 - 496
Target Start/End: Complemental strand, 34053239 - 34052764
Alignment:
| Q |
21 |
ccaatcacttaaatcaagatttttctccaactcatccaaaacagctcttcctccagcatgaatacaaaagtgctcaaaagctaatttaaaatcaggaatg |
120 |
Q |
| |
|
||||||||| | |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34053239 |
ccaatcactaaggtcaagatttttctctaattcatccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcaggaatg |
34053140 |
T |
|
| Q |
121 |
tatggttttattttcatcttgaagatttttcgcgcaaccaatgtcccgaaaaataagagctgttctgacataggtagaactaatggtcctaatgttgtga |
220 |
Q |
| |
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|| |||||||| ||||||||||| ||||| |||||||| || ||||||| | ||||||||||||||||| || || ||||| || | |||||||| |
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| T |
34053139 |
tagggttttatcttcatcttgaaagcttttcttgcaaccaaagttgcgaaaaacagaagctgttctgacataggaagtaccaatggaccaagtgttgtga |
34053040 |
T |
|
| Q |
221 |
tgtttgttttgagtgcttctccggcaacagccattaggtcttttgagagtgatacaccgacttgcttt-gtgtcgtcttcttcttgaaagacacagccgt |
319 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||| | ||| ||| | || ||||||||||| |||||||| || | |
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| T |
34053039 |
tgttggttttcagtgcttctccggcaaccgccattaaatcttttgagagtgatacacc-aattgatttcttctcatcttcttcttggaagacacaaccat |
34052941 |
T |
|
| Q |
320 |
aggatttgttgtctgcacctttgtgcgttcggacggtgtggactagttggtattttgatcggaggcggtcgcgtggcttgttggagaggagaactgctgc |
419 |
Q |
| |
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| ||| ||| ||| || ||||| || |||||||||||||||| ||||||||||| | || || ||| | |||||||||||||||| ||||| |
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| T |
34052940 |
atgatctgtcgtccgcgcctttatgtgttcggacggtgtggatcagttggtatttagctcttttgctgtcagaagctttgttggagaggagaattgctga |
34052841 |
T |
|
| Q |
420 |
tcctcccattctaaagagacaatttggcactagcattgatctgtcgttgccgaaataccagtttagtgttatgttct |
496 |
Q |
| |
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||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
34052840 |
tcctcccattctaaacagacaatttgatactaacattgatctgtcattgccgaaataccagttgagtgtgatgttct |
34052764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 46572723 - 46572620
Alignment:
| Q |
40 |
tttttctccaactcatccaaaacagctcttcctccagcatgaatacaaaagtgctcaaaagctaatttaaaatcaggaatgtatggttttattttcatct |
139 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| ||||| || ||||| || |||||||||| || ||||||||||| || |||||||| ||||||| |
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| T |
46572723 |
tttttctccagttcatccaaaacagctctacctccggcatggatgcaaaaatgttcaaaagctagcttgaaatcaggaatataaggttttatcttcatct |
46572624 |
T |
|
| Q |
140 |
tgaa |
143 |
Q |
| |
|
|||| |
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|
| T |
46572623 |
tgaa |
46572620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 26453382 - 26453327
Alignment:
| Q |
61 |
acagctcttcctccagcatgaatacaaaagtgctcaaaagctaatttaaaatcagg |
116 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||| | ||||||||||| |
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|
| T |
26453382 |
acagctctaccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcagg |
26453327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 49041279 - 49041356
Alignment:
| Q |
36 |
aagatttttctccaactcatccaaaacagctcttcctccagcatgaatacaaaagtgctcaaaagctaatttaaaatc |
113 |
Q |
| |
|
|||||| |||| ||||||||| | |||||||||||| |||||||||||||| || || |||||||||||||| ||||| |
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| T |
49041279 |
aagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
49041356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 31333927 - 31333822
Alignment:
| Q |
40 |
tttttctccaactcatccaaaacagctcttcctccagcatgaatacaaaagtgctcaaaagctaatttaaaatcaggaatgtatggttttattttcatct |
139 |
Q |
| |
|
|||||||| | |||||| |||||||||||||| || |||||||| || || || || ||||||| || ||||||||||| || || || || ||||||| |
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| T |
31333927 |
tttttctctagctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatcaggaatataaggcttgatcttcatct |
31333828 |
T |
|
| Q |
140 |
tgaaga |
145 |
Q |
| |
|
|||||| |
|
|
| T |
31333827 |
tgaaga |
31333822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 48672060 - 48671999
Alignment:
| Q |
178 |
agctgttctgacataggtagaactaatggtcctaatgttgtgatgtttgttttgagtgcttc |
239 |
Q |
| |
|
||||||||||| | ||||| || |||||||||| |||||||||||| |||||||| ||||| |
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| T |
48672060 |
agctgttctgaaaagggtaggaccaatggtcctagtgttgtgatgttagttttgagagcttc |
48671999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 23499261 - 23499366
Alignment:
| Q |
40 |
tttttctccaactcatccaaaacagctcttcctccagcatgaatacaaaagtgctcaaaagctaatttaaaatcaggaatgtatggttttattttcatct |
139 |
Q |
| |
|
|||||||| | |||||| |||||||||||||| || |||||||| || || || || ||||||| || ||||| ||||| || || || || ||||||| |
|
|
| T |
23499261 |
tttttctctagctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatctggaatataaggcttgatcttcatct |
23499360 |
T |
|
| Q |
140 |
tgaaga |
145 |
Q |
| |
|
|||||| |
|
|
| T |
23499361 |
tgaaga |
23499366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 3749633 - 3749589
Alignment:
| Q |
91 |
tgctcaaaagctaatttaaaatcaggaatgtatggttttattttc |
135 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||| ||||| |
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|
| T |
3749633 |
tgctcaaaagctagcttataatcaggaatgtatggttttgttttc |
3749589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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