View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_low_12 (Length: 405)
Name: NF13739_low_12
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 33 - 389
Target Start/End: Original strand, 18109140 - 18109496
Alignment:
| Q |
33 |
gaataatctcactgacaagatcactcatttaaccataatctctatactttcatataaatacacaaacaatgaaacatataactcaacaagtgtcataatc |
132 |
Q |
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| T |
18109140 |
gaataatctccatgacaagaaaactcatttaaccataatatctagactttcatataaatacacaaacaatgaaacatataactcaacaagtgtcataatc |
18109239 |
T |
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| Q |
133 |
aaagcatttgtataactacaatttggtgaggcacaaatagtaatatttattttaaagttattatggctttcaattcacaacgtacatttagagcaccaac |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18109240 |
aaagcatttgtataactacaatttggtgaggcacaaatagtaatatttattctaaagttattatggctttcaattcacaacgtacatttagagcaccaac |
18109339 |
T |
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| Q |
233 |
tttccggtcacaactttcagttcgtcgtgtgtacgagactttgcagcctccatcagagatgaaagaaactcctgaagcgtaccttcttcatgtttatctt |
332 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18109340 |
tttccggtcacaactttcagttcgtcgtgtatacgagactttgcagcctccatcagagatgaaagaaactcctgaagcttaccttcttcatgtttatctt |
18109439 |
T |
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| Q |
333 |
cctggtatatgcctttaacttgttcacatggttgtttattccgtaagtacaattcat |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18109440 |
cctggtatatgcctttaacttgttcacatggttgtttattctgtaagtacaattcat |
18109496 |
T |
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