View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_low_13 (Length: 399)
Name: NF13739_low_13
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_low_13 |
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| [»] scaffold0627 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 135 - 389
Target Start/End: Complemental strand, 8546913 - 8546647
Alignment:
| Q |
135 |
agagcaaaacacataagattgtttcgattaaacataaaatcagaacagtgatcagagaaaagaagaaaaaacaccttgggtcggattggagaattgcaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8546913 |
agagcaaaacacataagattgtttcgattaaacataaaatcagaacagtgatcagagaaaagaagaaaaaacaccttgggtcggattggagaattgcaaa |
8546814 |
T |
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| Q |
235 |
cgcagggagcgtgcgttggtagaattgtttgcgagaaaggaaataagagtgcaaagggtttgactttagacccaaatttaatctataaagaaaatttaaa |
334 |
Q |
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| T |
8546813 |
cgcagggagcgtgcgttggtagaattgtttgcgagaaaggaaataagagggcaaagggtttgactttagacccaaatttaatctataaagaaaatttaaa |
8546714 |
T |
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| Q |
335 |
ccaa------------ttaatatgttaatgagtttcatcaaattgttaaggataatttgattttgat |
389 |
Q |
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| T |
8546713 |
ccaatcaaattgtaggttaatatgttaatgagtttcatcaaattgttaaggatagtttgattttgat |
8546647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 8547030 - 8546971
Alignment:
| Q |
18 |
cttctagccctaacaggggcaattgaatccttttttcttttcatggctacacttaattgc |
77 |
Q |
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| T |
8547030 |
cttctagccctaacaggggcaattgaatccttttttcttttcatggctacacttaattgc |
8546971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 8638119 - 8638157
Alignment:
| Q |
39 |
attgaatccttttttcttttcatggctacacttaattgc |
77 |
Q |
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| T |
8638119 |
attgaacccttttttcttttcatggctacactgaattgc |
8638157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 1581689 - 1581745
Alignment:
| Q |
274 |
gaaataagagtgcaaagggtttgactttagacccaaatttaatctataaagaaaattt |
331 |
Q |
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| T |
1581689 |
gaaataagagggcaa-gggtttgactctatacccaaatttcatttataaagaaaattt |
1581745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 1603126 - 1603070
Alignment:
| Q |
274 |
gaaataagagtgcaaagggtttgactttagacccaaatttaatctataaagaaaattt |
331 |
Q |
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| T |
1603126 |
gaaataagagggcaa-gggtttgactctatacccaaatttcatttataaagaaaattt |
1603070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 8536716 - 8536761
Alignment:
| Q |
23 |
agccctaacaggggcaattgaatccttttttcttttcatggctaca |
68 |
Q |
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| T |
8536716 |
agccctagcaggggcaattgaacctttttttcttttcatgactaca |
8536761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 328
Target Start/End: Complemental strand, 8546492 - 8546464
Alignment:
| Q |
300 |
ttagacccaaatttaatctataaagaaaa |
328 |
Q |
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| T |
8546492 |
ttagacccaaatttaatctataaagaaaa |
8546464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 8645431 - 8645487
Alignment:
| Q |
21 |
ctagccctaacaggggcaattgaatccttttttcttttcatggctacacttaattgc |
77 |
Q |
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| T |
8645431 |
ctagccctagcaggagttattgaaccgttttttcttttcatggctacactgaattgc |
8645487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 5825 - 5869
Alignment:
| Q |
21 |
ctagccctaacaggggcaattgaatccttttttcttttcatggct |
65 |
Q |
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| T |
5825 |
ctagccctaataggggtaattgaaccctcttttcttttcatggct |
5869 |
T |
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