View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_low_16 (Length: 390)
Name: NF13739_low_16
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 22625843 - 22625490
Alignment:
| Q |
14 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22625843 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
22625744 |
T |
|
| Q |
114 |
aaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgtaatattcaaattcaaaaccttttctttggtgacattca |
213 |
Q |
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| T |
22625743 |
acaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgcaatattcaaatacaaaaccttttctttggtgacattca |
22625644 |
T |
|
| Q |
214 |
gaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
313 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22625643 |
gaaccacttcttttaccgaactagggttttttacgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
22625544 |
T |
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| Q |
314 |
agttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaag |
367 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
22625543 |
agttatgacaaatgtagctacaccattaacaaatccttgggggagatgtttaag |
22625490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 22633327 - 22633688
Alignment:
| Q |
14 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633327 |
ataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
22633426 |
T |
|
| Q |
114 |
aaaaatagtaattataatcgatcaaaaattgaagagagaagttataacttataaacaaacgtaatattcaaattcaaaaccttttctttggtgacattca |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
22633427 |
aaaaatagtaattgtaatcgatcaaaaattgaagagagaagttataacttataaacaaacgcaatattcaaatacaaaaccttttctttggtgaaattca |
22633526 |
T |
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| Q |
214 |
gaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633527 |
gaaccacttcttttaccgaactagggttttttatgccaaattcctcgaacagactaaagcttgtatagtcaatacagtttggcttgatagtgagatcatc |
22633626 |
T |
|
| Q |
314 |
agttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataattg |
375 |
Q |
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|||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
22633627 |
agttatgacaaaagtagctacatcattaacaaatccttgggggagacgtgtaaggataattg |
22633688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 374
Target Start/End: Complemental strand, 22623363 - 22623168
Alignment:
| Q |
180 |
ttcaaattcaaaaccttttctttggtgacattcagaaccacttcttttactgaactagggtttttt-atgccaaattccttgaacaggctaaagcttgta |
278 |
Q |
| |
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||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||| |||||||||||| |
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| T |
22623363 |
ttcaaatacaaaatcttttctttagtgacattcagaaccacttcttttaccgaactagggtttttttatgccaaactcgttgaacaaactaaagcttgta |
22623264 |
T |
|
| Q |
279 |
tagtcaatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcctggggggagacgtttaaggataatt |
374 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| || ||| | ||||||||| |||| |
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| T |
22623263 |
taggcaatacaatttggcttgatagtgagatcatcagttatgacaaaagtagttacaccagtaacaaatccttggcggatatgtttaaggaaaatt |
22623168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 23354866 - 23354940
Alignment:
| Q |
36 |
atggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacct |
110 |
Q |
| |
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|||||||||| ||||| || |||||||||| |||||||||||||||||||| |||||| | ||||| ||||||| |
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| T |
23354866 |
atggtttcttttctagaaagaaatctgtcagagttgacttggaaagcaaagcacactttaaaagatcgagtacct |
23354940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 350
Target Start/End: Complemental strand, 23366186 - 23366019
Alignment:
| Q |
183 |
aaattcaaaaccttttctttggtgacattcagaaccacttcttttactgaactagggttttttatgccaaattccttgaacaggctaaagcttgtatagt |
282 |
Q |
| |
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|||| ||||||||||||| | ||||| || |||| || ||| || || ||||| | ||||| ||| |||||||||| || || | ||| |||| |||| |
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| T |
23366186 |
aaatgcaaaaccttttctatagtgactttaagaatcatttccttcaccgaacttgtgttttctattccaaattcctggagaagcccaaaacttgcgtagt |
23366087 |
T |
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| Q |
283 |
caatacagtttggcttgatagtgagatcatcagttatgacaaatgtagctacaccattaacaaatcct |
350 |
Q |
| |
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||||| | |||||| ||||| | |||||||| ||||| ||||| ||||| ||| | |||||||||||| |
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| T |
23366086 |
caatagaatttggcatgataatcagatcatcggttattacaaaagtagcaacatcgttaacaaatcct |
23366019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 23366406 - 23366321
Alignment:
| Q |
28 |
ctcaagggatggtttcttctctaggaacaaatctgtcaaagttgacttggaaagcaaagaacacttaagcagatcaagtacctata |
113 |
Q |
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|||||||||||||||||| ||| || ||||| |||||||| ||||| || | ||||||||| || | || |||||||||||||| |
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| T |
23366406 |
ctcaagggatggtttctttcctaaaaagaaatcggtcaaagtagacttcgacaacaaagaacattttaacaaatcaagtacctata |
23366321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 3733970 - 3734014
Alignment:
| Q |
304 |
tgagatcatcagttatgacaaatgtagctacaccattaacaaatc |
348 |
Q |
| |
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||||||| || ||||||||||| |||||||||||||||| ||||| |
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| T |
3733970 |
tgagatcgtccgttatgacaaaagtagctacaccattaagaaatc |
3734014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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