View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_low_17 (Length: 375)
Name: NF13739_low_17
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 7340406 - 7340708
Alignment:
| Q |
1 |
atttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacattttgtgtgtag |
100 |
Q |
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| T |
7340406 |
atttgatcttcttccattgttcttactctcatgtagtagctccatgatgcttccacttggtaatgcatgagtttttcttgattgaacattttgtgtgtag |
7340505 |
T |
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| Q |
101 |
taactgtggaatttaaaaatataagcaaaaaggttcgtgtgtttgtgatgacgaaaaatgagaaaggggaaagggaagttttataaggggttgaagggag |
200 |
Q |
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| T |
7340506 |
taactgtggaatttaacaatataagcaaaaaggttcgtgtgtttgtgatgatgaaaaatgagaaacgggaaagggaagttttataaggggttgaagggag |
7340605 |
T |
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| Q |
201 |
tgtgagaaaaaatccaagatgtggtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctgagggttgt |
300 |
Q |
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| T |
7340606 |
tgtgagaaaaaatctaagatgtggtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcagaggagcatgttctgagggttgt |
7340705 |
T |
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| Q |
301 |
ttt |
303 |
Q |
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||| |
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| T |
7340706 |
ttt |
7340708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7300058 - 7299969
Alignment:
| Q |
1 |
atttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
90 |
Q |
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| T |
7300058 |
atttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
7299969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 7333617 - 7333706
Alignment:
| Q |
1 |
atttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
90 |
Q |
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| T |
7333617 |
atttgatcttcttccattgttcttactctcatgtagtagctccatgatggttctacttggtaatgcatcagtttctcttgattgaacatt |
7333706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 7299809 - 7299741
Alignment:
| Q |
224 |
gtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctg |
292 |
Q |
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| T |
7299809 |
gtgtgtggaagaatgttggggaccatagggtacttggtttgtctgttattgtcggaggagcgtgttctg |
7299741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 7376330 - 7376402
Alignment:
| Q |
18 |
tgttcttactctcatgtagtagctcc---atgatggttctacttggtaatgcatcagtttctcttgattgaaca |
88 |
Q |
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| T |
7376330 |
tgttcttactctcatgtagtagctccatgatgatggttc-acttggcaatgcatgtgtttctcttgattgaaca |
7376402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 7333867 - 7333935
Alignment:
| Q |
224 |
gtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcggaggagcctgttctg |
292 |
Q |
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|||||||||| ||||||| | |||||||| || |||||| ||||||||||||||||| ||| ||||||| |
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| T |
7333867 |
gtgtgtggaagaatgttgtggaccatagggtacttggtttgtctgttattgtcggagaagcgtgttctg |
7333935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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