View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13739_low_18 (Length: 372)
Name: NF13739_low_18
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 49552654 - 49552982
Alignment:
| Q |
23 |
tgtaacatctgctaccagattaccgaaatgcagttatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcagg |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49552654 |
tgtaacatctgctactagattaccgaaatgcagtcatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcagg |
49552753 |
T |
|
| Q |
123 |
ttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttga |
222 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49552754 |
ttcaatattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttga |
49552853 |
T |
|
| Q |
223 |
agcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49552854 |
agcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatctcttgttcttgcagtgttatgtttttaccat |
49552953 |
T |
|
| Q |
323 |
gtcttccatgttgacagtaacagaagata |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49552954 |
gtcttccatgttgacagtaacagaagata |
49552982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 226 - 351
Target Start/End: Original strand, 49537536 - 49537661
Alignment:
| Q |
226 |
aacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatgtc |
325 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
49537536 |
aacatttgaagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatcccttgttcttgtggtgttttgtttttaccatgtc |
49537635 |
T |
|
| Q |
326 |
ttccatgttgacagtaacagaagata |
351 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49537636 |
ttccatgttgacagtaacagaagata |
49537661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 49537360 - 49537541
Alignment:
| Q |
23 |
tgtaacatctgctaccagattaccgaaa-tgcagttatgacaaatgtgtaggcc-atgggtacatcgttacctctacatgaaatatatgttggttcagca |
120 |
Q |
| |
|
|||||| ||||||| ||||||| |||| ||||||||||| |||||| ||| | | ||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
49537360 |
tgtaacttctgctagtagattactgaaactgcagttatgagaaatgtatagccagaagggtacatcaatacctctaaatgaaatatatgttggttcagca |
49537459 |
T |
|
| Q |
121 |
ggttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaa-agtctgaacatt |
206 |
Q |
| |
|
| |||| || || | ||||| |||| ||||| | ||||||| |||||||||||| |||||| ||| |||| |||||||||||| |
|
|
| T |
49537460 |
gattcaata-tcatataata----ctttccatttgctttcttgagttactttcacaattaaaaaactgatacaagagtctgaacatt |
49537541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University