View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13739_low_25 (Length: 249)
Name: NF13739_low_25
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13739_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 22377062 - 22377186
Alignment:
| Q |
10 |
aagaatatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatactaaattcccacaacacataatattagagctc |
109 |
Q |
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| T |
22377062 |
aagaaaatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatactaagttcccacaacacataatattagagctc |
22377161 |
T |
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| Q |
110 |
caatacaaggactaatcagagacat |
134 |
Q |
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| T |
22377162 |
caatacaaggactaatcagagacat |
22377186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 22377239 - 22377300
Alignment:
| Q |
186 |
ccttttatatatagctacctgcagtacggtatgtatataccggaggtttaaaacagaaatct |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22377239 |
ccttttatatatagctacctgcagtacggtatgtatatacaggaggtttaaaacagaaatct |
22377300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 30733963 - 30733839
Alignment:
| Q |
10 |
aagaatatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatactaaattcccacaacacataatattagagctc |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
30733963 |
aagaaaatacacataatcaatcaattattactgcttttgattaatttgattcctcttctgatataatattaagttcccacaacacataatattagagctc |
30733864 |
T |
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| Q |
110 |
caatacaaggactaatcagagacat |
134 |
Q |
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||||||||||||||||||||||||| |
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| T |
30733863 |
caatacaaggactaatcagagacat |
30733839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 30733786 - 30733723
Alignment:
| Q |
186 |
ccttttatatatagctacctgcagtacggtatgtatataccggaggtttaaaacagaaatctga |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30733786 |
ccttttatatatagctacctgcagtacggtatgtatatactggaggtttaaaacagaaatctga |
30733723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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