View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13739_low_4 (Length: 539)

Name: NF13739_low_4
Description: NF13739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13739_low_4
NF13739_low_4
[»] chr8 (12 HSPs)
chr8 (141-523)||(20171778-20172162)
chr8 (185-392)||(11428184-11428391)
chr8 (251-501)||(8150449-8150698)
chr8 (185-501)||(10186224-10186538)
chr8 (251-481)||(4138252-4138488)
chr8 (417-523)||(11428078-11428184)
chr8 (19-124)||(20171637-20171742)
chr8 (395-465)||(918949-919019)
chr8 (191-261)||(9083125-9083194)
chr8 (190-261)||(32663981-32664051)
chr8 (173-234)||(31686143-31686202)
chr8 (185-234)||(12274210-12274259)
[»] chr7 (12 HSPs)
chr7 (141-523)||(44393488-44393872)
chr7 (251-523)||(47233754-47234029)
chr7 (316-523)||(5767996-5768206)
chr7 (316-523)||(25419507-25419717)
chr7 (316-501)||(39066825-39067012)
chr7 (19-124)||(44393347-44393452)
chr7 (445-499)||(47932920-47932974)
chr7 (187-228)||(39063960-39064001)
chr7 (185-234)||(39073323-39073372)
chr7 (170-228)||(14755767-14755823)
chr7 (185-234)||(5768330-5768379)
chr7 (185-234)||(25419827-25419876)
[»] chr4 (15 HSPs)
chr4 (199-523)||(5430592-5430919)
chr4 (169-523)||(34737734-34738085)
chr4 (251-523)||(53830437-53830716)
chr4 (170-501)||(21802753-21803080)
chr4 (170-501)||(21632727-21633061)
chr4 (316-523)||(2504933-2505143)
chr4 (264-523)||(2500579-2500838)
chr4 (326-523)||(46092312-46092513)
chr4 (326-523)||(46134837-46135038)
chr4 (284-501)||(20036251-20036467)
chr4 (462-499)||(43943567-43943604)
chr4 (170-234)||(2505253-2505317)
chr4 (176-234)||(43942118-43942174)
chr4 (170-226)||(5874249-5874303)
chr4 (189-229)||(51868294-51868334)
[»] chr3 (13 HSPs)
chr3 (187-452)||(26215155-26215420)
chr3 (262-523)||(48266211-48266474)
chr3 (251-523)||(35870278-35870553)
chr3 (316-523)||(52349726-52349936)
chr3 (435-523)||(26215432-26215520)
chr3 (170-228)||(346592-346648)
chr3 (445-499)||(54945722-54945776)
chr3 (170-217)||(10179403-10179448)
chr3 (187-234)||(3744474-3744521)
chr3 (185-228)||(33519233-33519276)
chr3 (445-499)||(5884368-5884422)
chr3 (185-234)||(52349555-52349604)
chr3 (170-217)||(34209855-34209900)
[»] scaffold0516 (2 HSPs)
scaffold0516 (196-500)||(3127-3430)
scaffold0516 (188-289)||(1404-1504)
[»] chr5 (6 HSPs)
chr5 (179-517)||(37301929-37302266)
chr5 (251-523)||(21605001-21605274)
chr5 (316-523)||(36991043-36991253)
chr5 (185-234)||(10180436-10180485)
chr5 (185-226)||(11381255-11381296)
chr5 (193-286)||(11386776-11386869)
[»] chr2 (12 HSPs)
chr2 (251-533)||(41646629-41646912)
chr2 (316-523)||(7574023-7574233)
chr2 (316-523)||(16668618-16668828)
chr2 (395-460)||(43564237-43564302)
chr2 (395-453)||(29455447-29455505)
chr2 (191-261)||(6414329-6414398)
chr2 (185-234)||(22990032-22990081)
chr2 (179-234)||(37904098-37904153)
chr2 (185-234)||(7574355-7574404)
chr2 (185-234)||(16668938-16668987)
chr2 (187-240)||(29455077-29455130)
chr2 (187-240)||(31618575-31618628)
[»] chr1 (8 HSPs)
chr1 (251-523)||(22912463-22912735)
chr1 (316-523)||(13786229-13786439)
chr1 (204-500)||(23725986-23726278)
chr1 (316-520)||(25807706-25807914)
chr1 (170-234)||(29679029-29679095)
chr1 (187-234)||(39621645-39621692)
chr1 (185-234)||(13786058-13786107)
chr1 (170-217)||(42332478-42332523)
[»] chr6 (6 HSPs)
chr6 (316-523)||(13433385-13433595)
chr6 (413-523)||(16712046-16712155)
chr6 (179-229)||(18877355-18877405)
chr6 (185-234)||(8643585-8643634)
chr6 (185-234)||(13433717-13433766)
chr6 (170-226)||(18882289-18882343)
[»] scaffold0713 (1 HSPs)
scaffold0713 (179-234)||(7356-7411)
[»] scaffold0182 (1 HSPs)
scaffold0182 (445-499)||(10116-10170)
[»] scaffold0045 (1 HSPs)
scaffold0045 (185-226)||(1381-1422)
[»] scaffold0316 (1 HSPs)
scaffold0316 (185-229)||(5503-5547)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 141 - 523
Target Start/End: Original strand, 20171778 - 20172162
Alignment:
Q  141 aatgaaatgaaacattggttttggatgacatctctatctctatctctat----atatacatgtattctaaactacattttgtttatgtgtcacttcacta 236  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  20171778 aatgaaatgaaacattggttttggatgacatctccatctctatctctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcacta 20171877  T
Q  237 atattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattt 336  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  20171878 atattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttcttgattctttactagtcatttcttactatctaatctttcattt 20171977  T
Q  337 cccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaa 436  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20171978 cccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaa 20172077  T
Q  437 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20172078 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca--ttttctaagctcatatatatgttgct 20172162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 185 - 392
Target Start/End: Complemental strand, 11428391 - 11428184
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctct 284  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||| | |||||||||    
T  11428391 tctatatatacatgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctct 11428292  T
Q  285 cttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttac 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  11428291 cttttgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttac 11428192  T
Q  385 acaatgaa 392  Q
    ||||||||    
T  11428191 acaatgaa 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 251 - 501
Target Start/End: Complemental strand, 8150698 - 8150449
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 350  Q
    |||||||| | ||||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||    
T  8150698 taactaatctctcatacttatgccatgtgactcacttttgttcttgattctttactagccatttcttactatcta-tctttcatttcccatcagttgcaa 8150600  T
Q  351 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 450  Q
    |||| ||||||| ||||||||| |||  |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  8150599 aaacactccatttacttcactttatgcgagttacacaatgaatgcattataatcaattttattaatattgaggggttacattttaaaattattcatattc 8150500  T
Q  451 ttagtcaatcatcttacacacacaagtttactataaagctcctcatttttt 501  Q
    ||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  8150499 ttaatcagtcctcttacacacacaagtttactataaagctcctcatttttt 8150449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 185 - 501
Target Start/End: Original strand, 10186224 - 10186538
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctct 284  Q
    |||||||||||||||||||||| |||||||| |  |||||||||| | || |||     | |||  |||||||| | || |||||||| || ||| ||||    
T  10186224 tctatatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatatctcttacttatgccaagtgactct 10186322  T
Q  285 cttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttac 384  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| ||| ||||||  | |||| || ||||||| || |||||||    
T  10186323 cttttgttcttgattctttactagtcattccttactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttac 10186421  T
Q  385 acaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactat 484  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  10186422 acaatgaatgcattataatccattttattaatattgaggggttacattttaaaattgttcatattcttaatcaatcctcttacacacacaagtttactat 10186521  T
Q  485 aaagctcctcatttttt 501  Q
    |||||||||||||||||    
T  10186522 aaagctcctcatttttt 10186538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 251 - 481
Target Start/End: Original strand, 4138252 - 4138488
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatcta------atctttcatttcccatcaa 344  Q
    |||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||  |||||||||      ||||||||||||| |||      
T  4138252 taactaatctctcatacttatgccaagtggctctcttttgttcttgattctttactagccattctctactatctatctttcatctttcatttcctatccg 4138351  T
Q  345 ttggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattc 444  Q
    ||| ||||||  | |||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |||    
T  4138352 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatctattttattaatattgaggggttacgttttaaaattgttc 4138451  T
Q  445 atattcttagtcaatcatcttacacacacaagtttac 481  Q
    ||||||||| ||||   ||||||||||||||||||||    
T  4138452 atattcttaatcaagactcttacacacacaagtttac 4138488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 417 - 523
Target Start/End: Complemental strand, 11428184 - 11428078
Alignment:
Q  417 agtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatata 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11428184 agtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacagaagtttacgataaagctcctcattttttctaagctcatatata 11428085  T
Q  517 tgttgct 523  Q
    |||||||    
T  11428084 tgttgct 11428078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 20171637 - 20171742
Alignment:
Q  19 atatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagacactatagagtatggtagattacaagaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  20171637 atatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagatactatagagtatgatagattacaagaa 20171736  T
Q  119 tttcaa 124  Q
    ||||||    
T  20171737 tttcaa 20171742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 919019 - 918949
Alignment:
Q  395 tattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatctt 465  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  919019 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 918949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 9083194 - 9083125
Alignment:
Q  191 tatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 261  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||| |||| | ||| |||||||||||    
T  9083194 tatacatgtattctaaactacactttgcttatgtgtcacctcactaat-ttttttctttttaactaatttt 9083125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 32663981 - 32664051
Alignment:
Q  190 atatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 261  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| ||| |||||  ||| |||||||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaat-ttttccctttctaactaatttt 32664051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 31686143 - 31686202
Alignment:
Q  173 tctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    ||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||| ||||    
T  31686143 tctatctctatctctgtata--catgtattctaaactacatattgcttatgtgtcacctcac 31686202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 12274210 - 12274259
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||    
T  12274210 tctatatatacatgtatgctaagttacattttgtttatgtgtcacctcac 12274259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 141 - 523
Target Start/End: Original strand, 44393488 - 44393872
Alignment:
Q  141 aatgaaatgaaacattggttttggatgacatctctatctctatctctat----atatacatgtattctaaactacattttgtttatgtgtcacttcacta 236  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  44393488 aatgaaatgaaacattggttttggatgacatctccatctctatctctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcacta 44393587  T
Q  237 atattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattt 336  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  44393588 atattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttcttgattctttactagtcatttcttactatctaatctttcattt 44393687  T
Q  337 cccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaa 436  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44393688 cccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaa 44393787  T
Q  437 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  44393788 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca--ttttctaagctcatatatatgttgct 44393872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 251 - 523
Target Start/End: Complemental strand, 47234029 - 47233754
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 350  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| ||    
T  47234029 taactaatctctcatacttatgtcatgtggctatcttttgttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcaa 47233931  T
Q  351 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 450  Q
    |||| || |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  47233930 aaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattaaggggttacattttaaaattattcatattc 47233831  T
Q  451 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 523  Q
    ||| |||||| ||||||||||||||||   |||||||||||||||||| |||||| |||||| ||||||||||||||    
T  47233830 ttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttataagcttatatatatgttgct 47233754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 5768206 - 5767996
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  5768206 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaa 5768108  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||    
T  5768107 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttat 5768008  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  5768007 atatatgttgct 5767996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 25419717 - 25419507
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25419717 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25419619  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  25419618 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 25419519  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  25419518 atatatgttgct 25419507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 316 - 501
Target Start/End: Complemental strand, 39067012 - 39066825
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39067012 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 39066914  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctcatttttt 501  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||   ||||||||| ||||||||||||||    
T  39066913 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacatacaagtttattactataaggctcctcatttttt 39066825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 44393347 - 44393452
Alignment:
Q  19 atatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagacactatagagtatggtagattacaagaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  44393347 atatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagatactatagagtatgatagattacaagaa 44393446  T
Q  119 tttcaa 124  Q
    ||||||    
T  44393447 tttcaa 44393452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 47932974 - 47932920
Alignment:
Q  445 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 499  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||    
T  47932974 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 47932920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 39064001 - 39063960
Alignment:
Q  187 tatatatacatgtattctaaactacattttgtttatgtgtca 228  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  39064001 tatatatacatgtattctaacctacattttgcttatgtgtca 39063960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 39073372 - 39073323
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  39073372 tctatatatacatgtattctaacctacactttgcttatgtgtcacctcac 39073323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 14755767 - 14755823
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtca 228  Q
    |||||||||||||||||||||  |||||||||||||| ||||| |||| | ||||||||    
T  14755767 atctctatctctatctctata--tacatgtattctaagctacactttgctgatgtgtca 14755823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 5768379 - 5768330
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  5768379 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 5768330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 25419876 - 25419827
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  25419876 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 25419827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 199 - 523
Target Start/End: Original strand, 5430592 - 5430919
Alignment:
Q  199 tattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgat 298  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5430592 tattataaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgccatgtggctctcttttgttcttgat 5430691  T
Q  299 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtatt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5430692 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtatt 5430791  T
Q  399 ataatccattttat---taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca 495  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5430792 ataatccattttattaataatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaaactcctca 5430891  T
Q  496 ttttttctaagctcatatatatgttgct 523  Q
    ||||||||||||||||||||||||||||    
T  5430892 ttttttctaagctcatatatatgttgct 5430919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 169 - 523
Target Start/End: Complemental strand, 34738085 - 34737734
Alignment:
Q  169 catctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatact 268  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||||  |||||||||| | || |||   | | |||  |||||||| | |||||||    
T  34738085 catctctatctctatctctatata--catgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttc-taactaatctctcatact 34737989  T
Q  269 tatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttc 368  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||| |||||| ||||||  |||||    
T  34737988 tatgccatgtggatctcttttgttcttgattctttactagccattccgtacaatcta-tctttcattttccatcagttgcaaaaacactccatctacttc 34737890  T
Q  369 acttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttaca 468  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  34737889 acttcatgcaagttacacaatgaatgcattataatccattttattaacaatgaggggttacattttaaaattattcatattcttgatcaatcctcttaca 34737790  T
Q  469 cacacaagtttactataaagctcctcatt-ttttctaagctcatatatatgttgct 523  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  34737789 cacacaagtttactataaagctcctcatttttttctaagcttatatatatgttgct 34737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 251 - 523
Target Start/End: Complemental strand, 53830716 - 53830437
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatcta---atctttcatttcccatcaattg 347  Q
    |||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||   ||||||||||| |||||  |||    
T  53830716 taactaatctctcatacttatgccatgtggctatcttttgttcttgattctttactagccgttccttactatctatctatctttcattttccatcggttg 53830617  T
Q  348 gaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcata 447  Q
     |||||| ||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53830616 caaaaacactctatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcata 53830517  T
Q  448 ttcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 523  Q
    |||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  53830516 ttcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgct 53830437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 170 - 501
Target Start/End: Original strand, 21802753 - 21803080
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatactt 269  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| |  |||||||||| | || |||     | |||  |||||||| | ||||||||    
T  21802753 atctctatctctatctctatata--catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatactt 21802849  T
Q  270 atgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttca 369  Q
    ||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| ||||||  | |||| ||||||    
T  21802850 atgccaagtggctctcttttgttcttgattctttactagccattcattactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacttca 21802948  T
Q  370 cttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacac 469  Q
    |||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  21802949 cttcttgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaataatcttacac 21803048  T
Q  470 acacaagtttactataaagctcctcatttttt 501  Q
    ||||||||||||||||||||||||||||||||    
T  21803049 acacaagtttactataaagctcctcatttttt 21803080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 170 - 501
Target Start/End: Complemental strand, 21633061 - 21632727
Alignment:
Q  170 atctctatctctatctctatat----atacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcat 265  Q
    ||||||||||||||||||||||    ||||||||||||||| ||||||||||  |||||||||| | || ||||    | |||  |||||||| | ||||    
T  21633061 atctctatctctatctctatattattatacatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttc-taactaatctctcat 21632963  T
Q  266 acttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaa-ctctccattca 364  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||| ||||| |  | |||| |    
T  21632962 acttatgccaagtggcgctcttttgttcttgattctttactagccattccttactatcta-tctttcattttctatcagttgcaaaaaacatttcattta 21632864  T
Q  365 cttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatct 464  Q
    ||||||||| || ||||||||| ||||||| ||||| |||||||||||||||| ||||||||||  |||||||||| |||||||||||| |||||| |||    
T  21632863 cttcacttcttgcaagttacacgatgaatgcattatgatccattttattaatattgaggggttatgttttaaaattgttcatattcttaatcaatcttct 21632764  T
Q  465 tacacacacaagtttactataaagctcctcatttttt 501  Q
    |||||||||||||||||||||||||||||||||||||    
T  21632763 tacacacacaagtttactataaagctcctcatttttt 21632727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 2505143 - 2504933
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  2505143 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 2505045  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  2505044 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 2504945  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  2504944 atatatgttgct 2504933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 264 - 523
Target Start/End: Complemental strand, 2500838 - 2500579
Alignment:
Q  264 atacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattc 363  Q
    ||||||||| |||||||||||||||||||||||||||  |||||  ||||||||||||| || ||||||||||||||||  ||| |||||  | |||||     
T  2500838 atacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactattta-tctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  364 acttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatc 463  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||  |||||||  |||||| ||    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattttaaaattatttgtattcttgatcaatcctc 2500640  T
Q  464 ttacacacacaagtttactataaagctcctca-ttttttctaagctcatatatatgttgct 523  Q
    |||||||||||||||||||||||| || |||| ||||||||||||| | ||||||||||||    
T  2500639 ttacacacacaagtttactataaatctactcatttttttctaagcttacatatatgttgct 2500579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 326 - 523
Target Start/End: Original strand, 46092312 - 46092513
Alignment:
Q  326 atctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgagggg 425  Q
    ||||||||||| |||||  ||  |||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  46092312 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46092411  T
Q  426 ttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttg 521  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||    
T  46092412 ttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttg 46092511  T
Q  522 ct 523  Q
    ||    
T  46092512 ct 46092513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 326 - 523
Target Start/End: Original strand, 46134837 - 46135038
Alignment:
Q  326 atctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgagggg 425  Q
    ||||||||||| |||||  ||  |||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  46134837 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46134936  T
Q  426 ttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttg 521  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||    
T  46134937 ttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttg 46135036  T
Q  522 ct 523  Q
    ||    
T  46135037 ct 46135038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 284 - 501
Target Start/End: Original strand, 20036251 - 20036467
Alignment:
Q  284 tcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaa-ctctccattcacttcacttcatggaagtt 382  Q
    |||||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||  || ||||| | || || | ||||||||||||| |||||    
T  20036251 tcttttgttctt-attctttactagtcattcattactatcta-tctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagtt 20036348  T
Q  383 acacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttact 482  Q
     || |||||||| |||||||| ||||||||||||| ||||  ||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  20036349 gcataatgaatgcattataattcattttattaatattgagcagttacattttaaaattaatcatattcttaatcaatcctcttacactcacaagtttact 20036448  T
Q  483 ataaagctcctcatttttt 501  Q
    |||||| ||||||||||||    
T  20036449 ataaagttcctcatttttt 20036467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 43943567 - 43943604
Alignment:
Q  462 tcttacacacacaagtttactataaagctcctcatttt 499  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43943567 tcttacacacacaagtttactacaaagctcctcatttt 43943604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 2505317 - 2505253
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||| ||||| ||||| |||||||||||||||||||| |||||||||   |||||||||| ||||    
T  2505317 atctatatctatatctatatatatacatgtattctaacctacatttttcctatgtgtcacctcac 2505253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 43942118 - 43942174
Alignment:
Q  176 atctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||  |||||||||||||| |||||||||| |||  |||||||||||    
T  43942118 atctctatctctata--tacatgtattctaatctacattttgcttacatgtcacttcac 43942174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 5874249 - 5874303
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgt 226  Q
    |||||||||||||||||  |||||||||||||||||| ||||| |||| | ||||||    
T  5874249 atctctatctctatctc--tatatacatgtattctaagctacactttgctcatgtgt 5874303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 51868294 - 51868334
Alignment:
Q  189 tatatacatgtattctaaactacattttgtttatgtgtcac 229  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  51868294 tatatacatgtattctaacatacattttgcttatgtgtcac 51868334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 187 - 452
Target Start/End: Original strand, 26215155 - 26215420
Alignment:
Q  187 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctct 286  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||| ||| ||| | ||||||||||||| | ||||||||||| |||||||||||||    
T  26215155 tatatatacatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctct 26215254  T
Q  287 tttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacac 386  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26215255 tttgttcttgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacac 26215354  T
Q  387 aatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattctt 452  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26215355 aatgaatgtgttataatccattttattaatagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 262 - 523
Target Start/End: Original strand, 48266211 - 48266474
Alignment:
Q  262 tcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccat 361  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||||    
T  48266211 tcatacttatgtcatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcaaaaactctccat 48266309  T
Q  362 tcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatca 461  Q
    | |||| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||     
T  48266310 ttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcc 48266408  T
Q  462 tcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 523  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  48266409 tcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgct 48266474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 251 - 523
Target Start/End: Original strand, 35870278 - 35870553
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 350  Q
    |||||||| | ||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||  |    
T  35870278 taactaatctctcatacttatgccatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcga 35870376  T
Q  351 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 450  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  35870377 aaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagaggttacattttaaaattattcatattc 35870476  T
Q  451 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 523  Q
    ||| |||||| ||||||||||||||||   ||||||||||| |||||| |||||||||| || ||||||||||||||    
T  35870477 ttaatcaatcctcttacacacacaagtttattactataaaggtcctcatttttttctaaacttatatatatgttgct 35870553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 316 - 523
Target Start/End: Original strand, 52349726 - 52349936
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  52349726 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 52349824  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  52349825 tattgaggggttacattttaaaattatttatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 52349924  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  52349925 atatatgttgct 52349936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 26215432 - 26215520
Alignment:
Q  435 aaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215432 aaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 26215520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 346592 - 346648
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtca 228  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  346592 atctctatctctatctctata--tacatgtattctaaactacattttgcttatgtgtca 346648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 54945776 - 54945722
Alignment:
Q  445 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 499  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||    
T  54945776 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 54945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 10179448 - 10179403
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttg 217  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||    
T  10179448 atctctatctctatctctatata--catgtattctaaactacactttg 10179403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 3744521 - 3744474
Alignment:
Q  187 tatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  3744521 tatatatacatgtattctaacctacactttgcttatgtgtcacctcac 3744474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 33519276 - 33519233
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtca 228  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  33519276 tctatatatacatgtattctaacctacatattgcttatgtgtca 33519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 5884422 - 5884368
Alignment:
Q  445 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 499  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||| ||||||||    
T  5884422 atatttttattctatcctcttacacacacaagtttactacaaagcttctcatttt 5884368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 52349555 - 52349604
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  52349555 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 52349604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 34209855 - 34209900
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttg 217  Q
    |||||||||||||||||  ||||||||||||||||||| |||| ||||    
T  34209855 atctctatctctatctc--tatatacatgtattctaaattacactttg 34209900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 196 - 500
Target Start/End: Original strand, 3127 - 3430
Alignment:
Q  196 atgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttctt 295  Q
    ||||||| |||||||||||||  |||||||||||||||| ||  | | | ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  296 gattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgt 395  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||| ||| |||||| || |||| ||||||||||||| ||||| |||||||| ||     
T  3227 gattctttactagccattctttactattta-tctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattga 3325  T
Q  396 attataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca 495  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  3326 attataatccattttattaatattaagcggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttactataaagctcctca 3425  T
Q  496 ttttt 500  Q
    |||||    
T  3426 ttttt 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 1404 - 1504
Alignment:
Q  188 atatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctctt 287  Q
    |||||||||||||||||||  | ||||||| | || |||||| |||| ||  || ||||||| |||| ||| ||||||||||||| ||  ||||||||||    
T  1404 atatatacatgtattctaaggtgcattttgatgatttgtcacctcaccaaagttctcttttt-taaccaatctttcatacttatgccaaatggctctctt 1502  T
Q  288 tt 289  Q
    ||    
T  1503 tt 1504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 179 - 517
Target Start/End: Complemental strand, 37302266 - 37301929
Alignment:
Q  179 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgt 278  Q
    ||||||| |||||||||||||||||||| ||||||||||  |||||||||| | || |||   ||| |||  |||||||| | | ||||||||| |||||    
T  37302266 tctatctatatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttc-taactaatctcttatacttatgccatgt 37302168  T
Q  279 ggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatgga 378  Q
    || |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||||| ||||||| ||||||||||||| |    
T  37302167 ggatctcttttgttcttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgca 37302069  T
Q  379 agttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtt 478  Q
    |||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  37302068 agttacacaatgaatgcattataatccattttattaataatggagggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtt 37301969  T
Q  479 tactataaagctcctcatt-ttttctaagctcatatatat 517  Q
    ||||||||| ||||||||| ||||||||||| ||||||||    
T  37301968 tactataaaactcctcatttttttctaagcttatatatat 37301929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 251 - 523
Target Start/End: Complemental strand, 21605274 - 21605001
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 350  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||    || ||    
T  21605274 taactaatctctcatacttatgtcatgtggctatcttttgttcttgattctttattagtcattccttactatcta-tctttcattttccattggctgcaa 21605176  T
Q  351 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 450  Q
    |||| || |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  21605175 aaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttaaattttaaaattattcatattc 21605076  T
Q  451 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 523  Q
    ||| |||||| ||||||||||||||||   |||||||||||||||||| |||||||||||||  |||||||||||||    
T  21605075 ttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagct--tatatatgttgct 21605001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 316 - 523
Target Start/End: Original strand, 36991043 - 36991253
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  36991043 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaa 36991141  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||    
T  36991142 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttat 36991241  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  36991242 atatatgttgct 36991253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 10180436 - 10180485
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  10180436 tctatatatacatgtattctaacctacattttgcttatgtgtcacctcac 10180485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 11381255 - 11381296
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgt 226  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  11381255 tctatatatacatgtattctaacctacattttgcctatgtgt 11381296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 11386776 - 11386869
Alignment:
Q  193 tacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctct 286  Q
    |||||||||||||| |||||||||  |||  |||||| |||| || | | ||  |||||||| ||| | ||||||||||| |||||||||||||    
T  11386776 tacatgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 251 - 533
Target Start/End: Complemental strand, 41646912 - 41646629
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 350  Q
    |||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||     ||||||||||| |||||  ||| ||    
T  41646912 taactaatctctcatacttatgccatgtggctatcttttgttcttgattctttactagccattccttactt----atctttcattttccatcggttgcaa 41646817  T
Q  351 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 450  Q
    |||| ||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41646816 aaacactccatttacttcatttcatgcaagttacacaatgaatgtattttaatccattttattaatattgaggggttacattttaaaattattcatattc 41646717  T
Q  451 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca--ttttttctaagctcatatatatgttgctgatgatgtcc 533  Q
    ||| |||||| ||||||||||||||||   ||||||||||||||||||  ||||||||||||| |||||||||||||| ||| |||||    
T  41646716 ttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgttgcttatgttgtcc 41646629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 7574233 - 7574023
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  7574233 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 7574135  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  7574134 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 7574035  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  7574034 atatatgttgct 7574023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 16668828 - 16668618
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  16668828 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaa 16668730  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  16668729 tattgaggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 16668630  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  16668629 atatatgttgct 16668618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 43564237 - 43564302
Alignment:
Q  395 tattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatc 460  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  43564237 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatc 43564302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 29455447 - 29455505
Alignment:
Q  395 tattataatccattttattaatagtgaggggttacattttaaaattattcatattctta 453  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29455447 tattataatccattttattaatatcgaggggttacattttaaaattattcatattctta 29455505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 6414398 - 6414329
Alignment:
Q  191 tatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 261  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||| |||| | ||| |||||||||||    
T  6414398 tatacatgtattctaaactacactttgcttatgtgtcacctcactaat-ttttttctttttaactaatttt 6414329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 22990081 - 22990032
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  22990081 tctatatatacatgtattctaacgtacattttgcttatgtgtcacctcac 22990032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 37904153 - 37904098
Alignment:
Q  179 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    ||||| |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  37904153 tctatatctatatatacatgtattctaagctacatttttcctatgtgtcacctcac 37904098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 7574404 - 7574355
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  7574404 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 7574355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 16668987 - 16668938
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  16668987 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 16668938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 29455077 - 29455130
Alignment:
Q  187 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatat 240  Q
    |||||||| ||||||||||| |||||||||   ||||||||||||||| |||||    
T  29455077 tatatatatatgtattctaagctacatttttcctatgtgtcacttcaccaatat 29455130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 31618628 - 31618575
Alignment:
Q  187 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatat 240  Q
    |||||||| || |||||||| ||||| |||||||||||||||| |||| |||||    
T  31618628 tatatatatatatattctaagctacactttgtttatgtgtcacctcaccaatat 31618575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 251 - 523
Target Start/End: Complemental strand, 22912735 - 22912463
Alignment:
Q  251 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaa-ttgga 349  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||  ||| |    
T  22912735 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattattta-tctttcatttcccatcaggttgca 22912637  T
Q  350 aaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatatt 449  Q
     |||| ||||||| |||||||||| || | |||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  22912636 gaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattttaaaattattcatatt 22912538  T
Q  450 cttagtcaatcatcttacacacacaagtttactataaagctcctcatt-ttttctaagctcatatatatgttgct 523  Q
    |||| |||||| |||||||||||| | |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  22912537 cttaatcaatcctcttacacacacgaatttactattaagctcctcatttttttctaagcttatatatatgttgct 22912463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 316 - 523
Target Start/End: Original strand, 13786229 - 13786439
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13786229 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13786327  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  13786328 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 13786427  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  13786428 atatatgttgct 13786439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 204 - 500
Target Start/End: Complemental strand, 23726278 - 23725986
Alignment:
Q  204 taaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattcttt 303  Q
    |||| |||||||||||||||||||||||||| |   | | | ||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||    
T  23726278 taaattacattttgtttatgtgtcacttcaccagcgtctcccttttgtaactaatctctcatacttatgttatatggctctcttttgttcttgattcttt 23726179  T
Q  304 actagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataat 403  Q
    ||| | ||||| ||||||||| |||||||||||  ||||  ||| |||||| || |||| |||||| |||||| ||||| ||||||||||| ||||||||    
T  23726178 actggtcattctttactatct-atctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataat 23726080  T
Q  404 ccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttt 500  Q
    |||||||||||||| | |  ||||||||||| |||||||||||||||||| |||||| ||||   ||||||||||||||||||||||||||||||||    
T  23726079 ccattttattaatattaaacggttacatttt-aaattattcatattcttaatcaatcctctt--gcacacaagtttactataaagctcctcattttt 23725986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 316 - 520
Target Start/End: Complemental strand, 25807914 - 25807706
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||||||  ||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25807914 ttactatcta-tctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25807816  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca--ttttttctaagctca 510  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||  ||||||||||||| |    
T  25807815 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagctta 25807716  T
Q  511 tatatatgtt 520  Q
    ||||||||||    
T  25807715 tatatatgtt 25807706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 29679029 - 29679095
Alignment:
Q  170 atctctatctctatctctat--atatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  29679029 atctctatctctatctctctctatatacatgtattctaaactacactttgcttatgtgtcacctcac 29679095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 39621645 - 39621692
Alignment:
Q  187 tatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  39621645 tatatatacatgtattctaaactacactttgcttatgtgtcacctcac 39621692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 13786058 - 13786107
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  13786058 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 13786107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 42332478 - 42332523
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttg 217  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||    
T  42332478 atctctatctctatctc--tatatacatgtattataaactacactttg 42332523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 13433595 - 13433385
Alignment:
Q  316 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 415  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13433595 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13433497  T
Q  416 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 511  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  13433496 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 13433397  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  13433396 atatatgttgct 13433385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 413 - 523
Target Start/End: Complemental strand, 16712155 - 16712046
Alignment:
Q  413 taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca-ttttttctaagctcat 511  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| || ||||| ||||||| ||||||||||||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatcttacacacac--gttcaccataaaactcctcatttttttctaagctcat 16712058  T
Q  512 atatatgttgct 523  Q
    ||||||||||||    
T  16712057 atatatgttgct 16712046  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 18877355 - 18877405
Alignment:
Q  179 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcac 229  Q
    ||||||| | |||||||||||||||||| |||||||||| ||| |||||||    
T  18877355 tctatctatctatatacatgtattctaacctacattttgcttaggtgtcac 18877405  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 8643634 - 8643585
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||| |||  |||||| ||||    
T  8643634 tctatatatacatgtattctaagctacattttgcttacatgtcacctcac 8643585  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 13433766 - 13433717
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  13433766 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 13433717  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 18882289 - 18882343
Alignment:
Q  170 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgt 226  Q
    |||||||||||||||||  |||||||||||||||||| ||||| |||| ||| ||||    
T  18882289 atctctatctctatctc--tatatacatgtattctaagctacactttgcttaggtgt 18882343  T

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Target: scaffold0713 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 7356 - 7411
Alignment:
Q  179 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 234  Q
    ||||||| |||||||||||||||| ||| |||||||||| |||  |||||||||||    
T  7356 tctatctatatatatacatgtattttaagctacattttgcttacatgtcacttcac 7411  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 10170 - 10116
Alignment:
Q  445 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 499  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||| ||||||||    
T  10170 atatttttattctatcctcttacacacacaagtttactacaaagcttctcatttt 10116  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 1422 - 1381
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgt 226  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  1422 tctatatatacatgtattctaacctacattttgcctatgtgt 1381  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 5547 - 5503
Alignment:
Q  185 tctatatatacatgtattctaaactacattttgtttatgtgtcac 229  Q
    |||||||||||||||||||||| |||||||||   ||||||||||    
T  5547 tctatatatacatgtattctaacctacatttttcctatgtgtcac 5503  T

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