View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_high_1 (Length: 876)
Name: NF1373_high_1
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 452 - 869
Target Start/End: Original strand, 11319109 - 11319525
Alignment:
| Q |
452 |
aaatatgacttttttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctctagtctca |
551 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11319109 |
aaatatgacttctttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctctagtctca |
11319208 |
T |
|
| Q |
552 |
taattatgcaacaacattttttctttgaatacagctcttttcatccatcagaactcagtgtgcaataacatgaaattacaaaattcagaaaaaatatgat |
651 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
11319209 |
taattatgcaacaacattttttctttcaatacagctcttttcatccatcagaactcagtgtgcaataacatgaaattataaaattcagaaaaaacatgat |
11319308 |
T |
|
| Q |
652 |
ctaaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactata |
751 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11319309 |
ctgaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactata |
11319408 |
T |
|
| Q |
752 |
gaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaataaaccaatataattaatttaattttcttcacaccatatagaacactct |
851 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11319409 |
gaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaat-aaccaatataattaatttaattttcttcacaccatatagaacactct |
11319507 |
T |
|
| Q |
852 |
tgatggttagtataatct |
869 |
Q |
| |
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|||||||||||||||||| |
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| T |
11319508 |
tgatggttagtataatct |
11319525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 452 - 869
Target Start/End: Original strand, 11477130 - 11477546
Alignment:
| Q |
452 |
aaatatgacttttttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctctagtctca |
551 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11477130 |
aaatatgacttctttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctctagtctca |
11477229 |
T |
|
| Q |
552 |
taattatgcaacaacattttttctttgaatacagctcttttcatccatcagaactcagtgtgcaataacatgaaattacaaaattcagaaaaaatatgat |
651 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
11477230 |
taattatgcaacaacattttttctttcaatacagctcttttcatccatcagaactcagtgtgcaataacatgaaattataaaattcagaaaaaacatgat |
11477329 |
T |
|
| Q |
652 |
ctaaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactata |
751 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11477330 |
ctgaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactata |
11477429 |
T |
|
| Q |
752 |
gaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaataaaccaatataattaatttaattttcttcacaccatatagaacactct |
851 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11477430 |
gaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaat-aaccaatataattaatttaattttcttcacaccatatagaacactct |
11477528 |
T |
|
| Q |
852 |
tgatggttagtataatct |
869 |
Q |
| |
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|||||||||||||||||| |
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| T |
11477529 |
tgatggttagtataatct |
11477546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 29 - 405
Target Start/End: Original strand, 11470939 - 11471311
Alignment:
| Q |
29 |
agatatcatgtacttttatctttcgacaaaacaattcatttgaatgtaaccttacctatctttgtaatattccaacattaatattatgtaatcttgtcga |
128 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |
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| T |
11470939 |
agatatcatgtacttttgtctttcgacaaaacaattcatttgaatgtaaccttatctatctttgtaatattccaa-----acattatgtaatcttgtcga |
11471033 |
T |
|
| Q |
129 |
aatttatcaacaagaatcttcctttacannnnnnnngttgtttcatcgttatcctttctcaatatatttgtataactctaaacgttttgatgaaacttag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11471034 |
aatttatcaacaagaatcttcctttacattttttttgctgtttcatcgttatcctttctgaatatatttgtataactctaaacgttttgatgaaacttag |
11471133 |
T |
|
| Q |
229 |
ttttgaaccatacattacatttgccagtttgtaacaattgaatcatgcaacttttcattttcatgtttaactttgaaatcttaagttttcaacttgattg |
328 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11471134 |
ttttgaaccatacattgcatttgctagtttgtaacaattgtatcatgcaacttctcattttcatgtttaactttgaaatcttaaattttcaacttgattg |
11471233 |
T |
|
| Q |
329 |
tcattaatcattgtcatctaaataatcttcatcggcttcaaatact-acttatgtcattttggggggctttatttgtg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11471234 |
tcattaatcattgtcatctaaataatcttcatcggcttcaaatactaacttatgtcattttggggggctttatttgtg |
11471311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 397 - 454
Target Start/End: Original strand, 11318843 - 11318900
Alignment:
| Q |
397 |
ttatttgtgaccattttccttcgattgtttgttctctaaaaagggttcagagtctaaa |
454 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11318843 |
ttatttgtgaccattttcctttgattgtttgttctctaaaaagggttcagagtctaaa |
11318900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 397 - 454
Target Start/End: Original strand, 11476864 - 11476921
Alignment:
| Q |
397 |
ttatttgtgaccattttccttcgattgtttgttctctaaaaagggttcagagtctaaa |
454 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11476864 |
ttatttgtgaccattttcctttgattgtttgttctctaaaaagggttcagagtctaaa |
11476921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 759
Target Start/End: Complemental strand, 56401989 - 56401904
Alignment:
| Q |
675 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
759 |
Q |
| |
|
|||| |||||| ||||||| | |||||||||||| ||||||||||||||||||| |||||||||| ||||| |||| ||||||| |
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|
| T |
56401989 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaatgatgaaaattataaaagaaac |
56401904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 754
Target Start/End: Original strand, 18905203 - 18905260
Alignment:
| Q |
697 |
aacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaa |
754 |
Q |
| |
|
||||||||||| | || |||||||||||||||| ||||||||| ||| || ||||||| |
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|
| T |
18905203 |
aacaaagcataaaatttagctgcaactaagaaatatcaaaatggagagaattatagaa |
18905260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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