View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1373_high_20 (Length: 299)
Name: NF1373_high_20
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_high_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 1232553 - 1232816
Alignment:
| Q |
16 |
atgttgggacttggaaatgaatcccacatcgagaaacctagaaaacaactgagtagatattttagtttaaagaagtcgagagtgataagtggtattatct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
1232553 |
atgttgggacttggaaatgaatcccacatcgagaaacctagaaaacaactgagtagatattatagttaaaagaagtagagagtgataagtggtattatct |
1232652 |
T |
|
| Q |
116 |
aatctactgatagaattatgaatagtattatccattgatctatcttcaattacgctcggttaaacaaagagattagtggtgagttccattaaactcgcac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1232653 |
aatctactgatagaattatgaatagtattatccattgatctatcttcaattacgcttttttaaacaaagagattagtggtgagttccattaaactcgcac |
1232752 |
T |
|
| Q |
216 |
tatctctcatgaatcgagggtagttagcaggtagataaatggagaatacttgaactttttgctg |
279 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1232753 |
tatctctcatgaatcgtgggtagttagtaggtagataaatggagaatacttgaactttttgctg |
1232816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 1242045 - 1242227
Alignment:
| Q |
20 |
tgggacttggaaatgaatcccacatcgagaaacctagaaaacaactgagtagatattttagt-ttaaagaagtcgagagtgataagtggtattatctaat |
118 |
Q |
| |
|
|||||||||| || || ||||||||| |||||||||||||||||||||||||||| ||||| | |||||||| ||||||||| ||| |||||||| ||| |
|
|
| T |
1242045 |
tgggacttgggaaagagtcccacatccagaaacctagaaaacaactgagtagata--ttagtataaaagaagtagagagtgatgagtagtattatc-aat |
1242141 |
T |
|
| Q |
119 |
ctactgatagaattatgaatagtattatccattgatctatcttcaattacgctcggttaaacaaagagattagtggtgagttccattaaa |
208 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||||||| | | |||| | ||||||||||| |||||||||||||| |
|
|
| T |
1242142 |
----tgatagaactatgaatagtattatttgtttatctatcttcaattacatttgattaattagagagattagtgatgagttccattaaa |
1242227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University