View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_high_22 (Length: 277)
Name: NF1373_high_22
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 19884559 - 19884387
Alignment:
| Q |
56 |
attaataatctatggttgggt-atctttctttgacattgtctgtgaatttttacatggatttgaattgctcctgctataaaccattttcacccaatcaaa |
154 |
Q |
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| T |
19884559 |
attaataatctatggttgggttatctttctttgacattgtctgcgaatttttacatcgttttgaattgctcctgctatcaaccattttcacccaatcaga |
19884460 |
T |
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| Q |
155 |
ctccattttatccggtagtgaagccattgcaagggtgcagggataggtcccggtgcagactgcagctacaggg |
227 |
Q |
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| T |
19884459 |
ctccattttatccagtagtgaagccattgcgagggtgcagggataggtcccggtgcagatcgcaggtacaggg |
19884387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 19350349 - 19350245
Alignment:
| Q |
77 |
atctttctttgacattgtctgtgaatttttacatggatttgaattgctcctgctataaaccattttcacccaatcaaactccattttatccggtagtgaa |
176 |
Q |
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| T |
19350349 |
atctttcttttacattctctgttaatttgtccgtggatttaaatttctctctctgtcaactattttaacccaatcaaagtctattttatccagtagtgaa |
19350250 |
T |
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| Q |
177 |
gccat |
181 |
Q |
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||||| |
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| T |
19350249 |
gccat |
19350245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 18911981 - 18911877
Alignment:
| Q |
77 |
atctttctttgacattgtctgtgaatttttacatggatttgaattgctcctgctataaaccattttcacccaatcaaactccattttatccggtagtgaa |
176 |
Q |
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| T |
18911981 |
atctttctttgacattttatgtgaatttttccatggatttaaattgctcttgttatcaactattttcacccggtcgaactctattttatccgggagtgaa |
18911882 |
T |
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| Q |
177 |
gccat |
181 |
Q |
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||||| |
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| T |
18911881 |
gccat |
18911877 |
T |
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