View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_high_27 (Length: 253)
Name: NF1373_high_27
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 40183459 - 40183663
Alignment:
| Q |
42 |
ccgtcgacaacaatggtcatggctattagagaatcatatctatgccnnnnnnnn---actaaagaatcatatgtatgacatagatgatcaaattttctca |
138 |
Q |
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| T |
40183459 |
ccgtcgacaacaatggtcatggctattagagaatcatatctatgcctttttttttttactaaagaatcatatgtatgatatagataatcaaattttctca |
40183558 |
T |
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| Q |
139 |
ttgtacgaattgtgatttgagtttaagtatgaaattcttctattagtaggtcatacgtaaatttttgtcgtaaaccctcaccgtgattgattttttctct |
238 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40183559 |
ttgtacgaattgtgatttgagtttgagtatgaaattcttctattagtaggtcatacgtaaatttttgtcgtaaaccctcaccgtgattgattttttctct |
40183658 |
T |
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| Q |
239 |
ctctg |
243 |
Q |
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||||| |
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| T |
40183659 |
ctctg |
40183663 |
T |
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