View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_low_11 (Length: 409)
Name: NF1373_low_11
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 8348139 - 8347803
Alignment:
| Q |
11 |
atgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactacccaacctgaaagcttaaccaaacacaatcaa |
110 |
Q |
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| T |
8348139 |
atgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaccaaaacacaatcaa |
8348040 |
T |
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| Q |
111 |
actttattacaagaacgttttaacaacatgtaattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacactgcta |
210 |
Q |
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| T |
8348039 |
actttattacaagaaagttttaacaaaatgtaattcattttatttcgtacacacccagaataggcattcatcctacccataaccaaacggcacactgata |
8347940 |
T |
|
| Q |
211 |
accaaactacattattcaaaaacagcaaaagatgtactcatcttgtacagtaccaataggagatcctgcaaaaacaaaaattacttttagttcttggaaa |
310 |
Q |
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| T |
8347939 |
accaaactacattattctaaaacagcaaaagatgtactcatcttgtccggtaccaataggagatcctgcaaaaacaaaaattacttttagttcttggaaa |
8347840 |
T |
|
| Q |
311 |
caacatcaaagcattgcaatttccagggaataaattg |
347 |
Q |
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| T |
8347839 |
caacatcaaagcattgccatttccagggaataaattg |
8347803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 344
Target Start/End: Complemental strand, 26730418 - 26730273
Alignment:
| Q |
201 |
cacactgctaaccaaactacattattcaaaaacagcaaaaga-tgtactcatcttgtacagtaccaataggagatcctgcaaaaacaaaaa-ttactttt |
298 |
Q |
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| T |
26730418 |
cacagtgctaatcaatctacattattctacaacagcaaaaaaatgcaatcatcccatacagaacgaataagagatcctgcaaaagtaaaaaattaaattt |
26730319 |
T |
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| Q |
299 |
agttcttggaaacaacatcaaagcattgcaatttccagggaataaa |
344 |
Q |
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| T |
26730318 |
agtacttggaaataacatcaaagcagtgcaatttccatggaataaa |
26730273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 35901510 - 35901177
Alignment:
| Q |
9 |
agatgaactagttttctattgac-aaaaagccagatagcatataaaagattacattttcataccaaaactacccaacctgaaagcttaaccaaacacaat |
107 |
Q |
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| T |
35901510 |
agatgaactagttttctactgtccaaaaaacttaatagcatataaacgattacatttccctacagatactaccaaacatgaaagcttaagaaaacacaat |
35901411 |
T |
|
| Q |
108 |
caaactttattacaagaacgttttaacaacatgtaattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacactg |
207 |
Q |
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| T |
35901410 |
taaactttatcaaaggaaagtttcaacaaaatgacattcattttatttggtacacaacaagaataggcattcatcctacccttatccaaacagcacac-- |
35901313 |
T |
|
| Q |
208 |
ctaaccaaactacattattcaaaaacagcaaaagatgtactcatcttgtacagtaccaataggagatcctgcaaaaacaaaaattacttttagttcttgg |
307 |
Q |
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| | | |||||||||||| ||||||||||||||||||||| || || | ||||||||||||||||||| ||||| ||||||| ||||||||||||| |
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| T |
35901312 |
--atcgacactacattattctaaaacagcaaaagatgtactcgtcccgttcggtaccaataggagatcctgtaaaaa--aaaattaattttagttcttgg |
35901217 |
T |
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| Q |
308 |
aaacaacatcaaagcattgcaatttccagggaataaattg |
347 |
Q |
| |
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|||||| |||||||||||||| |||||| || |||||||| |
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| T |
35901216 |
aaacaatatcaaagcattgcagtttccatggcataaattg |
35901177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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