View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1373_low_16 (Length: 376)

Name: NF1373_low_16
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1373_low_16
NF1373_low_16
[»] chr8 (30 HSPs)
chr8 (156-348)||(3417355-3417547)
chr8 (7-110)||(3417179-3417282)
chr8 (177-269)||(39205494-39205586)
chr8 (156-224)||(38576288-38576356)
chr8 (156-210)||(37732824-37732878)
chr8 (161-214)||(27441469-27441522)
chr8 (161-210)||(32414524-32414573)
chr8 (157-206)||(37064815-37064864)
chr8 (156-212)||(9197818-9197874)
chr8 (156-212)||(11686962-11687018)
chr8 (156-224)||(26654364-26654432)
chr8 (156-212)||(31602014-31602070)
chr8 (156-224)||(41974638-41974706)
chr8 (156-211)||(15198289-15198344)
chr8 (156-214)||(3043240-3043298)
chr8 (160-210)||(8372915-8372965)
chr8 (156-206)||(9197093-9197143)
chr8 (156-206)||(26652291-26652341)
chr8 (156-212)||(3043963-3044019)
chr8 (156-212)||(8373691-8373747)
chr8 (160-224)||(17725640-17725704)
chr8 (156-224)||(22320372-22320440)
chr8 (156-212)||(31641509-31641565)
chr8 (156-212)||(31642085-31642141)
chr8 (156-207)||(3165125-3165176)
chr8 (160-206)||(17724767-17724813)
chr8 (156-206)||(27442145-27442195)
chr8 (156-206)||(32979828-32979878)
chr8 (156-206)||(39778916-39778966)
chr8 (156-206)||(39779845-39779895)
[»] chr5 (30 HSPs)
chr5 (156-346)||(4084877-4085067)
chr5 (161-214)||(1554079-1554132)
chr5 (156-212)||(19128767-19128823)
chr5 (156-212)||(19360474-19360530)
chr5 (156-212)||(234698-234754)
chr5 (156-212)||(237819-237875)
chr5 (160-220)||(6476781-6476841)
chr5 (156-212)||(19359701-19359757)
chr5 (156-207)||(29046026-29046077)
chr5 (156-206)||(13306273-13306323)
chr5 (157-211)||(22799759-22799813)
chr5 (161-214)||(7632097-7632150)
chr5 (168-220)||(10554556-10554608)
chr5 (156-212)||(17071221-17071277)
chr5 (156-212)||(28705877-28705933)
chr5 (159-207)||(34709040-34709088)
chr5 (169-243)||(1281846-1281921)
chr5 (156-207)||(29087922-29087973)
chr5 (161-212)||(33471087-33471138)
chr5 (161-212)||(34600263-34600314)
chr5 (168-210)||(1283500-1283542)
chr5 (156-206)||(17071798-17071848)
chr5 (160-214)||(27364483-27364537)
chr5 (156-234)||(28705162-28705240)
chr5 (156-234)||(33005518-33005596)
chr5 (156-189)||(31081996-31082029)
chr5 (156-212)||(235589-235645)
chr5 (156-212)||(236927-236983)
chr5 (156-220)||(25858207-25858271)
chr5 (161-205)||(38056796-38056840)
[»] chr6 (18 HSPs)
chr6 (209-346)||(12345892-12346029)
chr6 (160-234)||(19323743-19323817)
chr6 (156-234)||(19653967-19654045)
chr6 (160-212)||(2512439-2512491)
chr6 (156-212)||(10171273-10171329)
chr6 (156-212)||(26529511-26529567)
chr6 (156-211)||(33435337-33435392)
chr6 (156-206)||(8489284-8489334)
chr6 (157-210)||(33436274-33436327)
chr6 (156-212)||(10171964-10172020)
chr6 (157-209)||(19311828-19311880)
chr6 (168-224)||(19322992-19323048)
chr6 (156-212)||(21133225-21133281)
chr6 (156-212)||(26528820-26528876)
chr6 (156-219)||(18227729-18227791)
chr6 (156-214)||(505534-505592)
chr6 (156-212)||(3623172-3623228)
chr6 (156-212)||(8488466-8488522)
[»] chr1 (31 HSPs)
chr1 (196-346)||(33504113-33504263)
chr1 (156-220)||(13262830-13262894)
chr1 (156-212)||(25469085-25469141)
chr1 (156-224)||(28182059-28182127)
chr1 (156-212)||(30663975-30664031)
chr1 (161-212)||(28181535-28181586)
chr1 (157-206)||(37852521-37852570)
chr1 (156-228)||(4135527-4135599)
chr1 (156-212)||(7406242-7406298)
chr1 (156-224)||(49680808-49680876)
chr1 (156-211)||(50271783-50271838)
chr1 (161-207)||(4439210-4439256)
chr1 (156-214)||(8987787-8987845)
chr1 (156-214)||(25671167-25671225)
chr1 (160-234)||(34309207-34309281)
chr1 (156-229)||(32038474-32038547)
chr1 (156-212)||(13263515-13263571)
chr1 (161-205)||(17171933-17171977)
chr1 (156-212)||(30663355-30663411)
chr1 (160-224)||(49681660-49681724)
chr1 (156-242)||(9778940-9779027)
chr1 (169-224)||(30931898-30931953)
chr1 (157-224)||(36389773-36389840)
chr1 (161-207)||(4433851-4433897)
chr1 (156-194)||(12760773-12760811)
chr1 (156-206)||(19172580-19172630)
chr1 (156-206)||(36390372-36390422)
chr1 (161-214)||(169624-169677)
chr1 (156-212)||(10121551-10121607)
chr1 (156-220)||(19171775-19171839)
chr1 (156-212)||(25468507-25468563)
[»] chr2 (30 HSPs)
chr2 (156-310)||(29559320-29559474)
chr2 (156-221)||(1296377-1296442)
chr2 (156-221)||(9276319-9276384)
chr2 (161-229)||(15774205-15774273)
chr2 (160-214)||(9540333-9540387)
chr2 (161-214)||(22301866-22301919)
chr2 (156-224)||(1297109-1297177)
chr2 (156-224)||(9275584-9275652)
chr2 (160-220)||(24933838-24933898)
chr2 (162-214)||(26752719-26752771)
chr2 (160-220)||(29719448-29719508)
chr2 (156-207)||(29512369-29512420)
chr2 (156-210)||(33512095-33512149)
chr2 (168-221)||(38361077-38361130)
chr2 (156-212)||(18174668-18174724)
chr2 (156-212)||(22560566-22560622)
chr2 (161-205)||(27177915-27177959)
chr2 (156-224)||(36237629-36237697)
chr2 (156-210)||(8541749-8541803)
chr2 (156-206)||(11751073-11751123)
chr2 (156-206)||(18174097-18174147)
chr2 (156-206)||(22301192-22301242)
chr2 (157-207)||(23343778-23343828)
chr2 (156-206)||(23857028-23857078)
chr2 (165-214)||(11007238-11007287)
chr2 (169-210)||(16692974-16693015)
chr2 (156-212)||(11750255-11750311)
chr2 (156-220)||(12725605-12725669)
chr2 (156-220)||(18820430-18820494)
chr2 (156-212)||(19918720-19918776)
[»] chr7 (41 HSPs)
chr7 (7-102)||(18829573-18829668)
chr7 (156-313)||(16664023-16664180)
chr7 (156-313)||(17638383-17638540)
chr7 (7-83)||(44472350-44472426)
chr7 (7-83)||(22022449-22022525)
chr7 (200-300)||(22319973-22320073)
chr7 (161-214)||(1417610-1417663)
chr7 (156-221)||(25343229-25343294)
chr7 (161-214)||(38225972-38226025)
chr7 (156-224)||(25342494-25342562)
chr7 (156-224)||(25343300-25343368)
chr7 (157-220)||(7668480-7668543)
chr7 (156-215)||(46428184-46428243)
chr7 (156-234)||(26636100-26636178)
chr7 (156-205)||(36378809-36378858)
chr7 (156-212)||(27948443-27948499)
chr7 (156-224)||(30660590-30660658)
chr7 (156-224)||(37950454-37950522)
chr7 (156-212)||(45099892-45099948)
chr7 (201-276)||(3163585-3163660)
chr7 (156-207)||(25599019-25599070)
chr7 (156-207)||(46428821-46428872)
chr7 (160-210)||(13785594-13785644)
chr7 (160-234)||(30661432-30661506)
chr7 (160-234)||(37949606-37949680)
chr7 (161-206)||(3029203-3029248)
chr7 (156-221)||(3772516-3772581)
chr7 (159-212)||(21496982-21497035)
chr7 (156-205)||(23889812-23889861)
chr7 (157-221)||(18977759-18977823)
chr7 (161-233)||(24389594-24389666)
chr7 (156-212)||(40273557-40273613)
chr7 (157-212)||(26636859-26636914)
chr7 (169-243)||(47719671-47719746)
chr7 (160-234)||(19067638-19067712)
chr7 (172-217)||(3027987-3028032)
chr7 (182-215)||(5930525-5930558)
chr7 (169-210)||(23901095-23901136)
chr7 (163-208)||(43065119-43065164)
chr7 (157-206)||(45099136-45099185)
chr7 (160-224)||(3688385-3688449)
[»] chr4 (33 HSPs)
chr4 (7-83)||(6507973-6508049)
chr4 (159-300)||(7842440-7842581)
chr4 (156-234)||(8247694-8247772)
chr4 (156-215)||(47785795-47785854)
chr4 (161-218)||(142517-142574)
chr4 (156-224)||(8248507-8248575)
chr4 (162-234)||(8265365-8265437)
chr4 (156-224)||(8266172-8266240)
chr4 (156-220)||(24374787-24374851)
chr4 (160-220)||(19080387-19080447)
chr4 (156-212)||(26147031-26147087)
chr4 (161-212)||(11938714-11938765)
chr4 (156-206)||(598523-598573)
chr4 (161-207)||(599305-599351)
chr4 (156-214)||(31329714-31329772)
chr4 (156-224)||(7841791-7841857)
chr4 (156-213)||(9365167-9365224)
chr4 (156-212)||(20774179-20774235)
chr4 (156-212)||(24158819-24158875)
chr4 (156-212)||(30573708-30573764)
chr4 (156-204)||(40495093-40495141)
chr4 (156-212)||(47688478-47688534)
chr4 (160-212)||(56262480-56262532)
chr4 (161-215)||(1866346-1866400)
chr4 (156-206)||(44792641-44792691)
chr4 (156-206)||(47687907-47687957)
chr4 (168-210)||(55976176-55976218)
chr4 (157-206)||(44469491-44469540)
chr4 (163-212)||(55001439-55001488)
chr4 (171-243)||(55976922-55976995)
chr4 (156-220)||(1465318-1465382)
chr4 (181-221)||(16902903-16902943)
chr4 (168-212)||(16903642-16903686)
[»] chr3 (38 HSPs)
chr3 (156-224)||(45081390-45081458)
chr3 (156-212)||(48648201-48648257)
chr3 (156-207)||(14871151-14871202)
chr3 (156-214)||(13477055-13477113)
chr3 (158-224)||(37520548-37520614)
chr3 (156-212)||(20213530-20213586)
chr3 (156-224)||(46150716-46150784)
chr3 (156-207)||(37988222-37988273)
chr3 (157-212)||(51827493-51827548)
chr3 (156-194)||(10847289-10847327)
chr3 (156-206)||(20212978-20213028)
chr3 (160-210)||(21727530-21727580)
chr3 (161-218)||(8949938-8949995)
chr3 (161-210)||(17603171-17603220)
chr3 (156-221)||(52266443-52266508)
chr3 (168-212)||(981677-981721)
chr3 (156-212)||(27082774-27082830)
chr3 (161-221)||(31974654-31974714)
chr3 (160-212)||(48507031-48507083)
chr3 (156-212)||(48764475-48764531)
chr3 (161-212)||(13349418-13349469)
chr3 (169-212)||(13477777-13477820)
chr3 (157-212)||(48765069-48765124)
chr3 (157-207)||(265102-265152)
chr3 (170-243)||(17603928-17604002)
chr3 (178-228)||(23706786-23706836)
chr3 (178-228)||(23725242-23725292)
chr3 (178-228)||(23743698-23743748)
chr3 (156-206)||(33276890-33276940)
chr3 (156-206)||(33277509-33277559)
chr3 (156-194)||(44029786-44029824)
chr3 (156-206)||(48413317-48413367)
chr3 (158-212)||(48649172-48649226)
chr3 (163-212)||(48506443-48506491)
chr3 (156-213)||(52281764-52281821)
chr3 (156-193)||(52605501-52605538)
chr3 (161-206)||(54458670-54458715)
chr3 (156-212)||(41458031-41458087)
[»] scaffold0176 (1 HSPs)
scaffold0176 (156-219)||(26589-26652)
[»] scaffold0085 (3 HSPs)
scaffold0085 (169-221)||(15848-15900)
scaffold0085 (156-212)||(15020-15076)
scaffold0085 (157-212)||(15080-15135)
[»] scaffold0002 (1 HSPs)
scaffold0002 (156-212)||(428900-428956)
[»] scaffold1207 (1 HSPs)
scaffold1207 (160-206)||(1588-1634)
[»] scaffold0418 (1 HSPs)
scaffold0418 (156-204)||(6891-6939)
[»] scaffold0504 (1 HSPs)
scaffold0504 (156-205)||(5385-5434)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 156 - 348
Target Start/End: Original strand, 3417355 - 3417547
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 255  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417355 gagtcaggatctgttgacatctggtgttaacgaattcgttgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 3417454  T
Q  256 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417455 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatt 3417547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 3417179 - 3417282
Alignment:
Q  7 tccaagaatatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactcacaa 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417179 tccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactcacaa 3417278  T
Q  107 ttac 110  Q
    ||||    
T  3417279 ttac 3417282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 39205494 - 39205586
Alignment:
Q  177 tggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaatt 269  Q
    |||||||||||||| ||| |||| ||||||| ||||||| |||||||| ||| ||||||||||||||| | |||||||||||||| |||||||    
T  39205494 tggtgtcaacgaatccgttgacatcaaatctcaaccatctattttatttaatcaaaggtctataatcgcttgttcaccgaataaacttaaatt 39205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 38576356 - 38576288
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  38576356 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 38576288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 37732824 - 37732878
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  37732824 gagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaaacttaa 37732878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 27441469 - 27441522
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  27441469 aggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccat 27441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 32414573 - 32414524
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  32414573 aggatctgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 32414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 37064815 - 37064864
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  37064815 agtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatc 37064864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 9197874 - 9197818
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| |||||||||  |||||||||||||||| ||||||||||| |||||    
T  9197874 gagtcaggatccgttgacaccaagtgtcaacgaattcgttgacaccaaatcctaacc 9197818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 11687018 - 11686962
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| |||||| ||||    
T  11687018 gagttaggatccgttgacacctggtgtcaacgaattcgttgacactaaatctcaacc 11686962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 26654432 - 26654364
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||||| |||| ||||||||| |||||||| | |||||| ||||||||||||||||| || ||||||||    
T  26654432 gagtcaagatccgttgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtctattttatt 26654364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 31602014 - 31602070
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  31602014 gagttaggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 31602070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 41974638 - 41974706
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| | |||| |||| ||||    
T  41974638 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcagccattcattatatt 41974706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 15198344 - 15198289
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 211  Q
    |||||||||||  ||||||||||||||||||||||| || |||||||||| |||||    
T  15198344 gagtcaggatcctttgacacctggtgtcaacgaatttgttgacaccaaattttaac 15198289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 3043240 - 3043298
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||| |||||| ||||||||||||||||||| ||||| | ||||||||||| |||||||    
T  3043240 gagttaggatccgttgacacctggtgtcaacaaattcattgacaccaaatcctaaccat 3043298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 8372915 - 8372965
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||| ||||    
T  8372915 caggatccgttgacacctggtgtcaacggattcgttgacaccaaatattaa 8372965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 9197093 - 9197143
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||| ||| ||||||||| ||||||||||||||||| |||||||||||    
T  9197093 gagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 26652291 - 26652341
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||| ||||||||| |||||||||||||||||  ||||||||||    
T  26652291 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 26652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 3044019 - 3043963
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| || |||||| ||||||||||||||||| |||||||||| ||||||    
T  3044019 gagttaggatccgtcgacaccaggtgtcaacgaattcgttgacaccaaatgttaacc 3043963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 8373747 - 8373691
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| |||||||||  ||||||||| |||||| |||||||||| ||||||    
T  8373747 gagtcaggatccgttgacaccaagtgtcaacggattcgttgacaccaaatattaacc 8373691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 17725704 - 17725640
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||| ||||||| | ||||||||||||||||| ||||||||||| || ||||  ||||||||    
T  17725704 caggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatcctatccatttattttatt 17725640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 22320372 - 22320440
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||||| |||||  || |||||||||| |||||| ||||||||||||||| | || ||||||||    
T  22320372 gagtcaggatccgttgatgccaggtgtcaacggattcgttgacaccaaatcttaatcgtctattttatt 22320440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 31641509 - 31641565
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||||| |||||||| | |||||| |||||||||||||||||    
T  31641509 gagtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaacc 31641565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 31642141 - 31642085
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||||| | ||||||||||||||| |||||||||||| ||||    
T  31642141 gagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatctcaacc 31642085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 3165176 - 3165125
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    ||||||||||| ||||||| | |||||||||| |||||| ||||||||||||    
T  3165176 gagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 3165125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 17724767 - 17724813
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||| |||||||||||||||||||  |||||| |||||||||||    
T  17724767 caggatcagttgacacctggtgtcaacagattcgttgacaccaaatc 17724813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 27442195 - 27442145
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||| ||||||||| ||||||||||||| |||  ||||||||||    
T  27442195 gagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 27442145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 32979878 - 32979828
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||| ||||||||| |||||||||||||| ||  ||||||||||    
T  32979878 gagtcaggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatc 32979828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 39778916 - 39778966
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  39778916 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39778966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 39779895 - 39779845
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  39779895 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39779845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 156 - 346
Target Start/End: Original strand, 4084877 - 4085067
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 255  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  4084877 gagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccattcattttattcaattaaaggtctataatcgctggttcaccg 4084976  T
Q  256 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtata 346  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4084977 aataaaattaaattgaaaacacagtattattgtactatttcttttcttctgcaaaatttgacgttcttcctcacaccaacccaacagtata 4085067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 1554132 - 1554079
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  1554132 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 1554079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 19128767 - 19128823
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||    
T  19128767 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 19128823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 19360530 - 19360474
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||    
T  19360530 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatattaacc 19360474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 234698 - 234754
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  234698 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatattaacc 234754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 237875 - 237819
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  237875 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatattaacc 237819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 6476841 - 6476781
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||| |||||    
T  6476841 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcattt 6476781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 19359701 - 19359757
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  19359701 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatattaacc 19359757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 29046026 - 29046077
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||    
T  29046026 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 29046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 13306323 - 13306273
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||| ||||||    
T  13306323 gagtcaggatccgttgacacctgatgtcaacgaattcgttgacatcaaatc 13306273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 22799813 - 22799759
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 211  Q
    |||||| ||| ||||||||| |||||||| |||||||| ||||||||||||||||    
T  22799813 agtcagaatccgttgacaccaggtgtcaatgaattcgttgacaccaaatcttaac 22799759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 7632097 - 7632150
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||| ||||    
T  7632097 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttatccat 7632150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 10554556 - 10554608
Alignment:
Q  168 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||||||| |||||||||| |||||| |||||||||||| |||||| |||||    
T  10554556 gttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcattt 10554608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 17071221 - 17071277
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  17071221 gagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 17071277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 28705933 - 28705877
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||| |||||| ||||    
T  28705933 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaacc 28705877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 34709088 - 34709040
Alignment:
Q  159 tcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    |||||||||||||||||| |||||||||| |||||| | ||||||||||    
T  34709088 tcaggatctgttgacaccaggtgtcaacggattcgttggcaccaaatct 34709040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 1281846 - 1281921
Alignment:
Q  169 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 243  Q
    |||||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  1281846 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 1281921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 29087922 - 29087973
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    ||||||||||| ||||||||| |||||||||| |||| | ||||||||||||    
T  29087922 gagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatct 29087973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 33471138 - 33471087
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||||||||  |||||||||||||||| |||| ||||||| ||||    
T  33471138 aggatctgttgacaccacgtgtcaacgaattcgttgacaacaaatctcaacc 33471087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 34600263 - 34600314
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  34600263 aggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 34600314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 1283542 - 1283500
Alignment:
Q  168 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||||| |||||||||| |||||| |||||||||||||||    
T  1283542 gttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 1283500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 17071848 - 17071798
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||| |||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  17071848 gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 17071798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 27364537 - 27364483
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||||| ||||||||| |||||||| | |||||| |||||||||||| ||||||    
T  27364537 caggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaaccat 27364483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 28705162 - 28705240
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||| ||| ||||||||| |||||||||| ||||||  ||||||||||| |||||  |||| |||| ||| |||||    
T  28705162 gagtcagtatccgttgacaccaggtgtcaacggattcgtttacaccaaatctcaaccagacattatatttaatcaaagg 28705240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 33005518 - 33005596
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    |||||| |||| |||||||||  ||||||| |||||||| ||||| ||||||||||| |  |||||||| ||| |||||    
T  33005518 gagtcatgatccgttgacaccaagtgtcaatgaattcgttgacacaaaatcttaaccgttgattttatttaatcaaagg 33005596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 31081996 - 31082029
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaa 189  Q
    ||||||||||| ||||||||||||||||||||||    
T  31081996 gagtcaggatccgttgacacctggtgtcaacgaa 31082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 235589 - 235645
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  235589 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 235645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 236983 - 236927
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  236983 gagttaggatccattgacaccaggtgtcaacggattcgtagacaccaaatctcaacc 236927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 25858207 - 25858271
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||| ||||| ||||||||  |||||||||| |||||| ||||||||||| ||| | |||||||    
T  25858207 gagtcgggatccgttgacactaggtgtcaacggattcgttgacaccaaatcataatcttccattt 25858271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 38056796 - 38056840
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 205  Q
    |||||||||||||||| |||||||||| ||| || ||||||||||    
T  38056796 aggatctgttgacaccaggtgtcaacggattggttgacaccaaat 38056840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 12346029 - 12345892
Alignment:
Q  209 aaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgca 308  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12346029 aaccatctattttattcaatcaaaggtctataatcgttgattcaccgaataaaattaaattgaaaacacagtattattgtactatttcttttcttctgca 12345930  T
Q  309 aaatttgacgttcttcttcacaccaacccaacagtata 346  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12345929 aaatttgacgttcttcctcacaccaacccaacagtata 12345892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 19323817 - 19323743
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||  ||||||||    
T  19323817 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcgattttatttgattaaagg 19323743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 19653967 - 19654045
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    |||||| ||||||||||||||||||||||| | | |||| ||||||||||||||||| |  |||||||| ||| |||||    
T  19653967 gagtcaagatctgttgacacctggtgtcaatggactcgttgacaccaaatcttaaccgtttattttatttaatcaaagg 19654045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 2512439 - 2512491
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||    
T  2512439 caggatccgttgacacctgatgtcaacgaattcgttgacaccaaatattaacc 2512491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 10171273 - 10171329
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  10171273 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 10171329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 26529567 - 26529511
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  26529567 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 26529511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 33435337 - 33435392
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 211  Q
    |||| |||||| ||||||||||||||| |||| |||||| ||||||||||||||||    
T  33435337 gagttaggatccgttgacacctggtgttaacggattcgttgacaccaaatcttaac 33435392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 8489334 - 8489284
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||| ||||||||| |||||||||||||||||  ||||||||||    
T  8489334 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 8489284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 33436327 - 33436274
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    |||||||||| ||||||||| | |||||||| |||||| |||||||||||||||    
T  33436327 agtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaa 33436274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 10172020 - 10171964
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  10172020 gagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaacc 10171964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 19311880 - 19311828
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatctta 209  Q
    |||||||||  ||||||||| |||||||||| |||||| ||||||||||||||    
T  19311880 agtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaatctta 19311828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 19322992 - 19323048
Alignment:
Q  168 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  19322992 gttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 19323048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 21133281 - 21133225
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| |||||||||  |||| ||||||||||| |||||||||||||||||    
T  21133281 gagttaggatccgttgacaccatgtgttaacgaattcgttgacaccaaatcttaacc 21133225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 26528820 - 26528876
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  26528820 gagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaacc 26528876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 18227729 - 18227791
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatt 219  Q
    ||||||||||| ||||||||| | |||||||| |||||| |||||||||||  |||||||||||    
T  18227729 gagtcaggatccgttgacaccag-tgtcaacggattcgttgacaccaaatcacaaccatccatt 18227791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 505534 - 505592
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||||||||||||||||| | |||||||||  |||||| ||||||||||  |||||||    
T  505534 gagtcaggatctgttgacatcaggtgtcaacagattcgttgacaccaaattctaaccat 505592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 3623172 - 3623228
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||| | ||||||||||||||| | |||||||||||| ||||    
T  3623172 gagttaggatccgttgacatcaggtgtcaacgaattctttgacaccaaatctcaacc 3623228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 8488466 - 8488522
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  8488466 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 8488522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 196 - 346
Target Start/End: Original strand, 33504113 - 33504263
Alignment:
Q  196 gacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaacaaagcattattgtactattt 295  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| ||| || ||||||||||| |||    
T  33504113 gacaccaaatctcaaccatccattttattcaatcaaaggtctataatcgtttgttcatcgaataaacttaaattgaacacacagtattattgtactcttt 33504212  T
Q  296 cttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtata 346  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||| ||||    
T  33504213 cttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatata 33504263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 13262830 - 13262894
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| |||| |||||||    
T  13262830 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccctccattt 13262894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 25469141 - 25469085
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||    
T  25469141 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 25469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 28182127 - 28182059
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||||||||||||| |||||||||| |||| | ||||||||||||||||| || ||||||||    
T  28182127 gagtgaggatctgttgacaccaggtgtcaacggattctttgacaccaaatcttaaccgtctattttatt 28182059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 30664031 - 30663975
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||||    
T  30664031 gagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaacc 30663975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 28181535 - 28181586
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  28181535 aggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaacc 28181586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 37852521 - 37852570
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  37852521 agtcaggatccgttgacacctggtgtcaacgaattcgttaacaccaaatc 37852570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 4135599 - 4135527
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 228  Q
    |||| |||||| |||| || | |||||||||  |||||| |||||||||||||||||||| ||||||||||||    
T  4135599 gagttaggatccgttggcatcaggtgtcaacatattcgttgacaccaaatcttaaccatcaattttattcaat 4135527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 7406242 - 7406298
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||| ||||    
T  7406242 gagtcaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatctcaacc 7406298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 49680808 - 49680876
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  49680808 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 49680876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 50271838 - 50271783
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 211  Q
    ||||||||||| ||||||||| ||| |||| |||||||| ||||||||||||||||    
T  50271838 gagtcaggatccgttgacaccaggtatcaatgaattcgttgacaccaaatcttaac 50271783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 4439256 - 4439210
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||    
T  4439256 aggatccgttgacacctggtgtcaacggattcgttgacaccaaatct 4439210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 8987787 - 8987845
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||||||||| ||||||| | |||||||||| |||||| |||||||||||| ||||||    
T  8987787 gagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctcaaccat 8987845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 25671167 - 25671225
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||||||||| ||||||||||||||| |||| ||||||  |||||||||| |||||||    
T  25671167 gagtcaggatccgttgacacctggtgttaacggattcgttaacaccaaatcctaaccat 25671225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 34309281 - 34309207
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  34309281 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 34309207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 32038474 - 32038547
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaatt 229  Q
    |||| |||||| ||||| ||| ||||||||||||||||| |||||||||||| |||| || | |||||| ||||    
T  32038474 gagttaggatcggttgataccaggtgtcaacgaattcgttgacaccaaatctcaaccgtctaatttatttaatt 32038547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 13263571 - 13263515
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||| | |||||| |||||||||||| ||||    
T  13263571 gagtcaggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaacc 13263515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 17171933 - 17171977
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 205  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||    
T  17171933 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 17171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 30663355 - 30663411
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| ||| |||||| |||||| |||||||||||| ||||    
T  30663355 gagtcaggatccgttgacaccaggtatcaacggattcgttgacaccaaatctcaacc 30663411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 49681724 - 49681660
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||| ||||||||| | | ||||||||| ||| |||||||||||| ||||||| ||||||||    
T  49681724 caggatccgttgacaccagatatcaacgaatccgttgacaccaaatctcaaccatcgattttatt 49681660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 9779027 - 9778940
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataat 242  Q
    ||||||||||| |||||||||||||||||||| ||   | ||||||||||||  |||||| ||||| || |||  |||||||||||||    
T  9779027 gagtcaggatccgttgacacctggtgtcaacggatagtttgacaccaaatctccaccatctattttttttaatccaaaggtctataat 9778940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 30931898 - 30931953
Alignment:
Q  169 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||||||| |||||||||| ||||||  ||||||||||||||||||| | ||||||    
T  30931898 ttgacaccaggtgtcaacggattcgttaacaccaaatcttaaccatctaatttatt 30931953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 36389773 - 36389840
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||||||||| |||||||||||||||||||| ||| |  ||||||||||||  ||| || ||||||||    
T  36389773 agtcaggatccgttgacacctggtgtcaacggatttgctgacaccaaatctcgaccgtctattttatt 36389840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 4433897 - 4433851
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    |||||| ||||||||| |||||||||| |||||| ||||||||||||    
T  4433897 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 4433851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 12760773 - 12760811
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgt 194  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  12760773 gagttaggatccgttgacacctggtgtcaacgaattcgt 12760811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 19172630 - 19172580
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||||||||  |||||||| |||||||||| |||||| |||||||||||    
T  19172630 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 36390422 - 36390372
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||| |||||| ||||||||| ||||||||||||| ||| |||||||||||    
T  36390422 gagttaggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 169677 - 169624
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||| ||||||||| ||||||||||||||  | |||||||||||| ||||||    
T  169677 aggatccgttgacaccaggtgtcaacgaatttattgacaccaaatctcaaccat 169624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 10121607 - 10121551
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| |||||||||| ||| || |||||||||||| ||||    
T  10121607 gagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatctcaacc 10121551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 19171775 - 19171839
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||| ||||| ||||||| |  ||||||||| |||||| ||||||||||| ||||| |||||||    
T  19171775 gagtcgggatccgttgacatcaagtgtcaacggattcgttgacaccaaatcctaaccttccattt 19171839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 25468507 - 25468563
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||||| |||||||||| |||| | |||||||||||| ||||    
T  25468507 gagtcaggatccattgacaccaggtgtcaacggattcattgacaccaaatctcaacc 25468563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 156 - 310
Target Start/End: Complemental strand, 29559474 - 29559320
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 255  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||  |    
T  29559474 gagttaggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaatcatccattttattcaatcaaaggtctgtaatcgtttgttcatgg 29559375  T
Q  256 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaa 310  Q
    |||||| |||||||||||||| |  ||||||| ||| ||||||||||||||||||    
T  29559374 aataaacttaaattgaaaacacattattattgcactctttcttttcttctgcaaa 29559320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 1296377 - 1296442
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  1296377 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 1296442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 9276384 - 9276319
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  9276384 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 9276319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 15774205 - 15774273
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaatt 229  Q
    |||||| |||||||||||||||||||||||| || |||||||||||| ||||||| |||||||| ||||    
T  15774205 aggatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaaccatcaattttatttaatt 15774273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 9540333 - 9540387
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  9540333 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 9540387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 22301919 - 22301866
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22301919 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 22301866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 1297177 - 1297109
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  1297177 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 1297109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 9275584 - 9275652
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  9275584 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 9275652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 24933838 - 24933898
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  24933838 caggatccgttgacacctggtgtcaacgaattcattgacaccaaatctcaaccattcattt 24933898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 26752771 - 26752719
Alignment:
Q  162 ggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  26752771 ggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccat 26752719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 29719448 - 29719508
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |||||||    
T  29719448 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccctccattt 29719508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 29512369 - 29512420
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||||    
T  29512369 gagtcatgatccgttgacacctggtgtcaacgaatttgttgacaccaaatct 29512420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 33512095 - 33512149
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||| |||| ||||    
T  33512095 gagtcaggatccgttgacacctagtgtcaacgaattcgttgacactaaatattaa 33512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 38361077 - 38361130
Alignment:
Q  168 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    ||||||| | ||||||||||||||||| |||||||||||| ||||||| |||||    
T  38361077 gttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 38361130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 18174724 - 18174668
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  18174724 gagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 18174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 22560622 - 22560566
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||| | |||||||||| |||||| |||||||||||| ||||    
T  22560622 gagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatctcaacc 22560566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 27177915 - 27177959
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 205  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||    
T  27177915 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 27177959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 36237629 - 36237697
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||||| ||||||||| |||||||||| |||| | |||||||||| | ||||||  ||||||||    
T  36237629 gagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatttcaaccatttattttatt 36237697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 8541749 - 8541803
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||||||| ||||||| | ||| ||||||||||||| ||||| |||||||||    
T  8541749 gagtcaggatccgttgacatcaggtctcaacgaattcgttgacacaaaatcttaa 8541803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 11751123 - 11751073
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||| |||||| ||||||||| |||||||||||||||||  ||||||||||    
T  11751123 gagttaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 11751073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 18174097 - 18174147
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||| |||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  18174097 gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 18174147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 22301192 - 22301242
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||| ||||||||| ||||||||||||| |||  ||||||||||    
T  22301192 gagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 22301242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 23343778 - 23343828
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    |||||||||||||||||||| | |||||||| |||||| |||| |||||||    
T  23343778 agtcaggatctgttgacaccagatgtcaacggattcgttgacatcaaatct 23343828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 23857078 - 23857028
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||| |||||| |||||||||||||||||||| ||| || |||||||||||    
T  23857078 gagttaggatccgttgacacctggtgtcaacggattggttgacaccaaatc 23857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 11007238 - 11007287
Alignment:
Q  165 tctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||||||||| |||||||||| |||||| ||||| |||||| ||||||    
T  11007238 tctgttgacaccaggtgtcaacggattcgttgacactaaatctcaaccat 11007287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 16693015 - 16692974
Alignment:
Q  169 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  16693015 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 16692974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 11750255 - 11750311
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  11750255 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 11750311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 12725669 - 12725605
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    |||| |||||| ||||||||| |||||||||| ||| || |||||||||||  |||||| |||||    
T  12725669 gagttaggatccgttgacaccaggtgtcaacggatttgttgacaccaaatcccaaccattcattt 12725605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 18820430 - 18820494
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||| |||||  |||||| | |||||||||| |||||| ||||||||||| ||||| |||||||    
T  18820430 gagtcgggatccattgacatcaggtgtcaacggattcgttgacaccaaatcctaaccttccattt 18820494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 19918776 - 19918720
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||| ||| |||||||| |||||| |||| ||||||| ||||    
T  19918776 gagtcaggatccgttgacatctgatgtcaacggattcgttgacatcaaatctcaacc 19918720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 18829573 - 18829668
Alignment:
Q  7 tccaagaatatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactc 102  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  18829573 tccaagaaaatgaaagaaaaataatcaaatgataacatgtgaacatccaaggctaaataatataaatagacttgctatatacaaaagccattactc 18829668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 313
Target Start/End: Complemental strand, 16664180 - 16664023
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 255  Q
    |||| |||||| ||||||||| |||||||||| || ||| ||||| |||||| ||||||| ||| || | |||  || | ||||||| ||| |||||||     
T  16664180 gagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaaccatctattgtaataaatccaatggctataattgtttgttcacca 16664081  T
Q  256 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatt 313  Q
    |||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  16664080 aataaacttaaattgaaaacatagtattattgtactctttcttttcttctgcaaaatt 16664023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 313
Target Start/End: Complemental strand, 17638540 - 17638383
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 255  Q
    |||| |||||| ||||||||| |||||||||| || ||| ||||| |||||| ||||||| ||| || | |||  || | ||||||| ||| |||||||     
T  17638540 gagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaaccatctattgtaataaatccaatggctataattgtttgttcacca 17638441  T
Q  256 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatt 313  Q
    |||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  17638440 aataaacttaaattgaaaacatagtattattgtactctttcttttcttctgcaaaatt 17638383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 44472426 - 44472350
Alignment:
Q  7 tccaagaatatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 83  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  44472426 tccaagaaaatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgcta 44472350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 22022525 - 22022449
Alignment:
Q  7 tccaagaatatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 83  Q
    |||||||| ||||||| |||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||    
T  22022525 tccaagaaaatgaaaggaaaataatcaaatgctaacctgtgaagatccaaggctaaataatataaaaagacttgcta 22022449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 22319973 - 22320073
Alignment:
Q  200 ccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaacaaagcattattgtactatttcttt 299  Q
    ||||||||  |||||||||| ||||| || ||||| ||||||||||| ||||||| |||||| |||||||||||||| || | ||||||||| ||| |||    
T  22319973 ccaaatctcgaccatccattgtattcgatcaaaggcctataatcgtttgttcaccaaataaacttaaattgaaaacacagtaatattgtactcttttttt 22320072  T
Q  300 t 300  Q
    |    
T  22320073 t 22320073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 1417610 - 1417663
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  1417610 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 1417663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 25343294 - 25343229
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    ||||||||||| ||||||||| |||||||| |||||||| |||||||||||| ||||||| |||||    
T  25343294 gagtcaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccatcaatttt 25343229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 38226025 - 38225972
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  38226025 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 38225972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 25342494 - 25342562
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  25342494 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 25342562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 25343300 - 25343368
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  25343300 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 25343368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 7668480 - 7668543
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    |||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||| |||||    
T  7668480 agtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcattt 7668543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 46428184 - 46428243
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatc 215  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||||    
T  46428184 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatc 46428243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 26636100 - 26636178
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| | |||| |||| ||| |||||    
T  26636100 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtacattatatttaatcaaagg 26636178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 36378809 - 36378858
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 205  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  36378809 gagtcaggatctgttgacacctggtgtcgacggattcgttgacaccaaat 36378858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 27948443 - 27948499
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  27948443 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 27948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 30660590 - 30660658
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  30660590 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 30660658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 37950522 - 37950454
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  37950522 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 37950454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 45099948 - 45099892
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  45099948 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaattttaacc 45099892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 3163585 - 3163660
Alignment:
Q  201 caaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaaca 276  Q
    ||||| || |||||||||| ||||  || ||||| ||||||||| | |||||||||||||| ||||||||||||||    
T  3163585 caaattttgaccatccattgtatttgatcaaaggcctataatcgattgttcaccgaataaatttaaattgaaaaca 3163660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 25599019 - 25599070
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||    
T  25599019 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 25599070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 46428872 - 46428821
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||| |||||||    
T  46428872 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatct 46428821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 13785644 - 13785594
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  13785644 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 13785594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 30661506 - 30661432
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  30661506 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 30661432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 37949606 - 37949680
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  37949606 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 37949680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 3029248 - 3029203
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||    
T  3029248 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 3029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 3772581 - 3772516
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| |||| || |||||    
T  3772581 gagttaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatctcaaccgtctatttt 3772516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 21497035 - 21496982
Alignment:
Q  159 tcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  21497035 tcaggatccgttgacaacaggtgtcaacgaattcgttgacaccaaatctcaacc 21496982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 23889861 - 23889812
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 205  Q
    |||||| |||| |||| |||||||||||||||||||||| ||||||||||    
T  23889861 gagtcaagatccgttggcacctggtgtcaacgaattcgttgacaccaaat 23889812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 18977823 - 18977759
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    ||||||||||  |||||||| |||||||||| ||||||  ||||||||||| ||||||| |||||    
T  18977823 agtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatctcaaccatcaatttt 18977759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 24389666 - 24389594
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaag 233  Q
    |||||| ||||||||| |||||||||| |||| | |||||||||||| ||||||  |||||||| ||| ||||    
T  24389666 aggatccgttgacaccaggtgtcaacggattcattgacaccaaatctcaaccatttattttatttaatcaaag 24389594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 40273557 - 40273613
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| |||||||| |||||||| |||||||||||| ||||    
T  40273557 gagttaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaacc 40273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 26636914 - 26636859
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||| ||||||||  |||||||||| |||||| |||||||||||| ||||    
T  26636914 agtcaggatccgttgacacaaggtgtcaacggattcgttgacaccaaatctcaacc 26636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 47719746 - 47719671
Alignment:
Q  169 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 243  Q
    |||||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  47719746 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 47719671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 19067638 - 19067712
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||| |||||||||  ||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  19067638 caggatccgttgacaccacgtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 19067712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 3027987 - 3028032
Alignment:
Q  172 acacctggtgtcaacgaattcgtcgacaccaaatcttaaccatcca 217  Q
    ||||| ||||||||||||||||| |||||||||||| |||| ||||    
T  3027987 acaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtcca 3028032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 5930525 - 5930558
Alignment:
Q  182 tcaacgaattcgtcgacaccaaatcttaaccatc 215  Q
    ||||||||||||| ||||||||||||||||||||    
T  5930525 tcaacgaattcgttgacaccaaatcttaaccatc 5930558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 23901136 - 23901095
Alignment:
Q  169 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    |||||||| ||||||||||||||||| ||||| |||||||||    
T  23901136 ttgacaccaggtgtcaacgaattcgttgacactaaatcttaa 23901095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 43065164 - 43065119
Alignment:
Q  163 gatctgttgacacctggtgtcaacgaattcgtcgacaccaaatctt 208  Q
    |||| ||||||||| |||||||||| |||||| |||||||||||||    
T  43065164 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctt 43065119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 45099136 - 45099185
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||||||| ||||||| | |||||||||||||||||  ||||||||||    
T  45099136 agtcaggatccgttgacatcaggtgtcaacgaattcgttaacaccaaatc 45099185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 3688385 - 3688449
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||| ||||||||| | | |||||| |||||| |||||||||||||| ||||  ||||||||    
T  3688385 caggatccgttgacaccagatatcaacggattcgttgacaccaaatcttatccatttattttatt 3688449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 6507973 - 6508049
Alignment:
Q  7 tccaagaatatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 83  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  6507973 tccaagaaaatgaaagaaaaataatcaaatgataacctgtgaacatccaaggctaaataatataaaaagacttgcta 6508049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 300
Target Start/End: Complemental strand, 7842581 - 7842440
Alignment:
Q  159 tcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaat 258  Q
    ||||||||  |||||| | ||||||||||||||||| |||||||||||| ||||||| |||| ||| |||  || | |||||||  || || ||||||||    
T  7842581 tcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccatctatttcattaaatccaatggctataattatttgtacaccgaat 7842482  T
Q  259 aaaattaaattgaaaacaaagcattattgtactatttctttt 300  Q
    ||| ||||||||||| || |  ||||||||||| ||||||||    
T  7842481 aaacttaaattgaaagcacaatattattgtactctttctttt 7842440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 8247694 - 8247772
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||| || |||||||| ||| |||||    
T  8247694 gagtcaggatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccgtctattttatttaatcaaagg 8247772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 47785854 - 47785795
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatc 215  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||    
T  47785854 gagtcaggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatc 47785795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 142574 - 142517
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccat 218  Q
    |||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  142574 aggatccgttgacaccgggtgtcaacgaattcattgacaccaaatcttaaccatccat 142517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 8248575 - 8248507
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||||| ||||||||| | |||||||| |||||| ||||||||||||||||| || ||||||||    
T  8248575 gagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccgtctattttatt 8248507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 8265365 - 8265437
Alignment:
Q  162 ggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 234  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||||||||| || |||||||| ||| |||||    
T  8265365 ggatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccgtctattttatttaatcaaagg 8265437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 8266240 - 8266172
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||||| ||||||||| | |||||||| |||||| ||||||||||||||||| || ||||||||    
T  8266240 gagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccgtctattttatt 8266172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 24374787 - 24374851
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||||||||| ||||||||| | ||||||||||||||| |||||||||||| |||| |||||||    
T  24374787 gagtcaggatccgttgacaccagctgtcaacgaattcgttgacaccaaatctcaaccttccattt 24374851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 19080387 - 19080447
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||| | |||||| |||||    
T  19080387 caggatctgttgacaccaggtgtcaacggattcgttgacaccaaatttcaaccattcattt 19080447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 26147087 - 26147031
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  26147087 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 26147031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 11938714 - 11938765
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||| ||||    
T  11938714 aggatctgttcacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 11938765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 598523 - 598573
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||||||||||||| | |||||||||||||||  ||||||||||    
T  598523 gagtcaggatctgttgacaccagatgtcaacgaattcgttaacaccaaatc 598573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 599351 - 599305
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||    
T  599351 aggatccgttgacacctggtgtcaacggattcgttgacaccaaatct 599305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 31329772 - 31329714
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||||||||| ||||||||| |||||||||| ||||||  |||||||||| |||||||    
T  31329772 gagtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatcctaaccat 31329714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 7841791 - 7841857
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    |||| |||||| |||||||  |||||||||||||||||| |||||||||||| ||| ||| ||||||||    
T  7841791 gagttaggatccgttgaca--tggtgtcaacgaattcgttgacaccaaatctcaactatctattttatt 7841857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 9365167 - 9365224
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacca 213  Q
    ||||||||||| ||| ||||| |||||||||||||| || |||||||||||| |||||    
T  9365167 gagtcaggatccgttaacaccaggtgtcaacgaatttgttgacaccaaatctcaacca 9365224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 20774235 - 20774179
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  20774235 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 20774179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 24158875 - 24158819
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||||| |||||||||  |||||| |||||||||||||||||    
T  24158875 gagtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaacc 24158819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 30573764 - 30573708
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  30573764 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 30573708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 40495093 - 40495141
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaa 204  Q
    ||||||||||| ||||||||| ||||||||| ||||||| |||||||||    
T  40495093 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 40495141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 47688534 - 47688478
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  47688534 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 47688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 56262480 - 56262532
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||| ||||    
T  56262480 caggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaacc 56262532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 1866346 - 1866400
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatc 215  Q
    |||||| ||||||||  |||||||| |||||||| |||||||||||| |||||||    
T  1866346 aggatccgttgacactaggtgtcaatgaattcgttgacaccaaatctcaaccatc 1866400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 44792691 - 44792641
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  44792691 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 44792641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 47687907 - 47687957
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||| |||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  47687907 gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 47687957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 55976176 - 55976218
Alignment:
Q  168 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||||| |||||||||| |||||| |||||||||||||||    
T  55976176 gttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 55976218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 44469491 - 44469540
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||| |||| | ||||||| ||||||||||||||||| |||||||||||    
T  44469491 agtcatgatccgatgacaccaggtgtcaacgaattcgttgacaccaaatc 44469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 55001488 - 55001439
Alignment:
Q  163 gatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| ||||||||| |||||||||| |||||| ||||| |||||||||||    
T  55001488 gatccgttgacaccaggtgtcaacggattcgttgacactaaatcttaacc 55001439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 55976995 - 55976922
Alignment:
Q  171 gacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 243  Q
    |||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  55976995 gacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 55976922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 1465318 - 1465382
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 220  Q
    ||||||||||| ||||||||| |||||||||  |||| | |||| ||||||  ||||||||||||    
T  1465318 gagtcaggatccgttgacaccaggtgtcaacagattcattgacatcaaatcacaaccatccattt 1465382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 16902903 - 16902943
Alignment:
Q  181 gtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    |||||||||||||| |||||||||||| ||||||| |||||    
T  16902903 gtcaacgaattcgttgacaccaaatctcaaccatcaatttt 16902943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 16903686 - 16903642
Alignment:
Q  168 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  16903686 gttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 16903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 45081458 - 45081390
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||||| |||||||||| ||||||||| |||||| |||||||||||| ||||||  ||||||||    
T  45081458 gagtcaggatccgttgacacctagtgtcaacggattcgttgacaccaaatctcaaccatttattttatt 45081390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 48648201 - 48648257
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||    
T  48648201 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 48648257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 14871151 - 14871202
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  14871151 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 14871202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 13477055 - 13477113
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 214  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||||||||||| |||||||    
T  13477055 gagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatcctaaccat 13477113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 37520614 - 37520548
Alignment:
Q  158 gtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||||||||||| ||||||| || |||||    
T  37520614 gtcaggatccgttgataccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatcttatt 37520548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 20213586 - 20213530
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| |||||| |||||||||| ||||||||||| |||||    
T  20213586 gagtcaggatccgttgacaccaggtgtcgacgaattcgttgacaccaaatcctaacc 20213530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 46150784 - 46150716
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 224  Q
    ||||||||||| ||||||||  |||||||||| |||||| |||||||||||| ||||||  ||||||||    
T  46150784 gagtcaggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaaccatttattttatt 46150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 37988273 - 37988222
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    |||||||||||  |||||||| ||||||||||||||||| ||||||||||||    
T  37988273 gagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatct 37988222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 51827548 - 51827493
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||| |||| |||||||||||||||||||| |||||| | |||||||||||||||    
T  51827548 agtcaagatccgttgacacctggtgtcaacggattcgttgtcaccaaatcttaacc 51827493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 10847289 - 10847327
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgt 194  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  10847289 gagtcaggatccgttgacacctggtgtcaacgaattcgt 10847327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 20212978 - 20213028
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||| ||| ||||||||| ||||||||||||||||| |||||||||||    
T  20212978 gagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 20213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 21727580 - 21727530
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  21727580 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 21727530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 8949938 - 8949995
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccat 218  Q
    |||||| |||||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  8949938 aggatccgttgacaccatgtgtcaacgaatccgttgacacaaaatcttaaccatccat 8949995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 17603171 - 17603220
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 210  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  17603171 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 17603220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 52266508 - 52266443
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    ||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||| |||| || |||||    
T  52266508 gagtcaggatccgttaacaccaggtgttaacgaattcgttgacaccaaatctcaaccgtctatttt 52266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 981677 - 981721
Alignment:
Q  168 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  981677 gttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 981721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 27082774 - 27082830
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||||  ||||||||||||||||| ||||||||||| |||||    
T  27082774 gagtcaggatccattgacactaggtgtcaacgaattcgttgacaccaaatcctaacc 27082830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 31974654 - 31974714
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    |||||| |||||||||  ||||||||| |||||| |||||||||||| ||||||| |||||    
T  31974654 aggatccgttgacaccaagtgtcaacggattcgttgacaccaaatctcaaccatctatttt 31974714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 48507083 - 48507031
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||| ||||    
T  48507083 caggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaacc 48507031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 48764475 - 48764531
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||||  |||||| | ||||||||||||||||| |||||||||||| ||||    
T  48764475 gagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 48764531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 13349418 - 13349469
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||| ||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  13349418 aggatcggttgataccaggtgtcaacaaattcgttgacaccaaatcttaacc 13349469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 13477820 - 13477777
Alignment:
Q  169 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||    
T  13477820 ttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 13477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 48765124 - 48765069
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||  |||||||| |||||||| | |||||| |||||||||||||||||    
T  48765124 agtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaacc 48765069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 265152 - 265102
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 207  Q
    ||||| |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  265152 agtcatgatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 265102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 17604002 - 17603928
Alignment:
Q  170 tgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 243  Q
    ||||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  17604002 tgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 17603928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 23706836 - 23706786
Alignment:
Q  178 ggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 228  Q
    |||||||||  |||||| |||||||||||| ||||||| ||||||||||||    
T  23706836 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23706786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 23725292 - 23725242
Alignment:
Q  178 ggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 228  Q
    |||||||||  |||||| |||||||||||| ||||||| ||||||||||||    
T  23725292 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 23743748 - 23743698
Alignment:
Q  178 ggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 228  Q
    |||||||||  |||||| |||||||||||| ||||||| ||||||||||||    
T  23743748 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23743698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 33276890 - 33276940
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||||||||||| ||| |||||||||| | |||||| |||||||||||    
T  33276890 gagtcaggatctgttaacatctggtgtcaatggattcgttgacaccaaatc 33276940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 33277559 - 33277509
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||| ||| ||||||||| |||||||||||||||||  ||||||||||    
T  33277559 gagtcagaatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 33277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 44029824 - 44029786
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgt 194  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  44029824 gagtcaggatccgttgacatctggtgtcaacgaattcgt 44029786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 48413317 - 48413367
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||| ||||| |||||||||| |||||||||| |||||| |||||||||||    
T  48413317 gagtaaggatttgttgacaccaggtgtcaacggattcgttgacaccaaatc 48413367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 48649226 - 48649172
Alignment:
Q  158 gtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||  |||||||| |||||||||  |||||| |||||||||||||||||    
T  48649226 gtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaacc 48649172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 48506443 - 48506491
Alignment:
Q  163 gatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||| |||||||| |||||||||||||||||| |||||||||||| ||||    
T  48506443 gatccgttgacac-tggtgtcaacgaattcgttgacaccaaatctcaacc 48506491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 52281764 - 52281821
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacca 213  Q
    ||||||| ||| ||||| |||||||||||||| |||||| ||||||| |||| |||||    
T  52281764 gagtcagaatccgttgatacctggtgtcaacggattcgttgacaccagatctcaacca 52281821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 52605538 - 52605501
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcg 193  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  52605538 gagtcaggatccgttgacaccaggtgtcaacgaattcg 52605501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 54458715 - 54458670
Alignment:
Q  161 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    |||||| |||||||||||||||||||| ||| || |||||||||||    
T  54458715 aggatccgttgacacctggtgtcaacggattggttgacaccaaatc 54458670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 41458031 - 41458087
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||  ||||| ||| |||||||||| |||||| |||||||||||| ||||    
T  41458031 gagtcaggattcgttgataccaggtgtcaacggattcgttgacaccaaatctcaacc 41458087  T

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Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 26589 - 26652
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatt 219  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||  |||||||||||    
T  26589 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacaaccatccatt 26652  T

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Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 15900 - 15848
Alignment:
Q  169 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 221  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  15900 ttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 15848  T

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Target: scaffold0085; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 15020 - 15076
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| |||||||||| ||||||||| |||| | |||||||||||| ||||    
T  15020 gagtcaggatccgttgacacctagtgtcaacggattcattgacaccaaatctcaacc 15076  T

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Target: scaffold0085; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 15080 - 15135
Alignment:
Q  157 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    |||||||||| |||||||||| ||||||||| |||| | |||||||||||| ||||    
T  15080 agtcaggatccgttgacacctagtgtcaacggattcattgacaccaaatctcaacc 15135  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 428956 - 428900
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 212  Q
    ||||||||||| ||||||||| ||| ||||||||||||| |||||||||||| ||||    
T  428956 gagtcaggatccgttgacacccggtatcaacgaattcgttgacaccaaatctcaacc 428900  T

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Target: scaffold1207 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 1588 - 1634
Alignment:
Q  160 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 206  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  1588 caggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatc 1634  T

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Target: scaffold0418 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 6939 - 6891
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaa 204  Q
    ||||||||||| ||||||||| ||||||||| ||||||| |||||||||    
T  6939 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 6891  T

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Target: scaffold0504 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 5434 - 5385
Alignment:
Q  156 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 205  Q
    ||||||||||| ||||||||| |||||||||| ||| || ||||||||||    
T  5434 gagtcaggatccgttgacaccaggtgtcaacggatttgttgacaccaaat 5385  T

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