View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1373_low_17 (Length: 368)
Name: NF1373_low_17
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 357
Target Start/End: Original strand, 37965677 - 37966001
Alignment:
| Q |
30 |
acgagatgatggagagtatgagtcactactataagaaaccttggaaaagatggcgtgctagtctcattcgtacttattttaggagcccttgggctatggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37965677 |
acgagatgatggagagtatgagtcactactataagaaaccttggaaaagatggcgtgctagtctcattcgtacttattttaggagcccttgggctatggt |
37965776 |
T |
|
| Q |
130 |
gtctcttgttgttgctaccatcatttttatttttactatcattcagactatatacacggttcgtcaattttatcaaaaggagtgctaacaacacactatt |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37965777 |
gtctcttgttgttgctaccttcatttttagttttactatcattcagactatatacacggttcgtcaattttatcaaaaggagtgctaacaacacactatt |
37965876 |
T |
|
| Q |
230 |
taactcacatttcattgattagtacttaaagttcatacaagtttcaaaatttatacctagctccttataatttcctctttaccagtttgatctatatttc |
329 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37965877 |
taactcacatttcattgattag---ttaaagctcatacaagtttcaaaatttatacctagctccttataatttcctctttaccagtttgatctatatttc |
37965973 |
T |
|
| Q |
330 |
taatatgttttcattttgattagttcat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37965974 |
taatatgttttcattttgattagttcat |
37966001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 37245047 - 37245206
Alignment:
| Q |
65 |
aaaccttggaaaagatggcgtgctagtctcattcgtacttattttaggagcccttgggctatggtgtctcttgttgttgctaccatcatttttattttta |
164 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| | || ||||| | ||| |
|
|
| T |
37245047 |
aaaccttggaaaagttggcgtgcaagtctcattcaaacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctctta |
37245146 |
T |
|
| Q |
165 |
ctatcattcagactatatacacggttcgtcaattttatcaaaaggagtgctaacaacaca |
224 |
Q |
| |
|
|||| ||||| ||||||||||| ||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
37245147 |
ctattattcaaactatatacacagttggtcaattttatcaaaaggattgctagcaacaca |
37245206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 37283500 - 37283654
Alignment:
| Q |
56 |
tactataagaaaccttggaaaagatggcgtgctagtctcattcgtacttattttaggagcccttgggctatggtgtctcttgttgttgctaccatcattt |
155 |
Q |
| |
|
|||| |||||| || |||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| | || ||| |
|
|
| T |
37283500 |
tactgtaagaagccgtggaaaagttggcgtgcaagtctcattcaaacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttccttt |
37283599 |
T |
|
| Q |
156 |
ttatttttactatcattcagactatatacacggttcgtcaattttatcaaaagga |
210 |
Q |
| |
|
|| | ||||||| ||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
37283600 |
ttgctcttactattattcaaactatatacacagttggtcaattttatcaaaagga |
37283654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 37319234 - 37319337
Alignment:
| Q |
43 |
gagtatgagtcactactataagaaaccttggaaaagatggcgtgctagtctcattcgtacttattttaggagcccttgggctatggtgtctcttgttgtt |
142 |
Q |
| |
|
|||||||||| | |||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| | ||| |||||||| || |||||||||| | |
|
|
| T |
37319234 |
gagtatgagtgattactgcaagaaaccgtggaaaagatggcgtgctaatctcattcaaacttattttagaaacccgtgggctattgtctctcttgttgct |
37319333 |
T |
|
| Q |
143 |
gcta |
146 |
Q |
| |
|
|||| |
|
|
| T |
37319334 |
gcta |
37319337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 16571986 - 16571908
Alignment:
| Q |
62 |
aagaaaccttggaaaagatggcgtgctagtctcattcgtacttattttaggagcccttgggctatggtgtctcttgttg |
140 |
Q |
| |
|
|||||||| ||||| | ||||||||| | ||||| || ||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
16571986 |
aagaaaccgtggaataaatggcgtgccaatctcactcacacttattttaggaacccttggtctatggtgtcacttgttg |
16571908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University