View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_low_19 (Length: 358)
Name: NF1373_low_19
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 350
Target Start/End: Complemental strand, 14525614 - 14525297
Alignment:
| Q |
29 |
aggttccaacatgagcggcaacttaatcttcccttttagacaacacaatgaaatttttggcgtaagtgcagcataatgtttaccggtcctctcagcatac |
128 |
Q |
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| T |
14525614 |
aggttccaacatgagcggcaacttaatcttcccttttagacaacacaatgaaatttttggcgtaagtgcagcataatgtttaccggtcctctcagcatac |
14525515 |
T |
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| Q |
129 |
caaaccatagcgccacatttctgacaaacagtgttcatctcaccaatatctagatattctgaaaagtaaagatag-nnnnnnnntaaaatttacctcatg |
227 |
Q |
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| T |
14525514 |
caaac-----cgccacatttctgacaaacagtgttcatcttaccaatatctagatattctgaaaagtaaagattgaaagaaaaaaaaaattaacctcatg |
14525420 |
T |
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| Q |
228 |
gatcatatacacgaactttcaaagttaagatgaccactactcaccttgtccttcactcttgtaaaaaagatgcattaacgcgagatcattatcaacaaaa |
327 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |
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| T |
14525419 |
gatcatatacactaactttcaaagttaagatgaccactactcaccttgtccttcactctcgtaaaaaagttgcattaaggcgagatcattatcaacaaaa |
14525320 |
T |
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| Q |
328 |
tggacatcggatgaatctgtggt |
350 |
Q |
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||||| ||||||||||||||||| |
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| T |
14525319 |
tggacgtcggatgaatctgtggt |
14525297 |
T |
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