View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1373_low_23 (Length: 332)
Name: NF1373_low_23
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_23 |
 | |
|
| [»] chr4 (11 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
| |
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| [»] scaffold0064 (1 HSPs) |
| | |
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| [»] scaffold0026 (1 HSPs) |
| | |
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| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 7506457 - 7506759
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7506457 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
7506556 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7506557 |
tttttaattttacaaatcgcactcctgagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaataagttattggaagagatgagga |
7506656 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaatcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
7506657 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaatcactacaccatttatcctttttaacaacaatcaaaaaatgttgtcagaactatgaaa |
7506756 |
T |
|
| Q |
330 |
aac |
332 |
Q |
| |
|
||| |
|
|
| T |
7506757 |
aac |
7506759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 7481791 - 7482033
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
7481791 |
ttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaattgaggctcttaatgttggtcagagaa |
7481890 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7481891 |
tttttaattttacaaatcgtacacctgagcaacgagttttgaaacaacgagaaactcactcctttattcgtgaggaagaagttattggaagagatgagga |
7481990 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaat |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7481991 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaat |
7482033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 7722621 - 7722379
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7722621 |
ttcttctcatcatccaaccaacttctcttttcatacaaaatggttcagaaaattaaggaacttagtaagagaattgaggcccttaatattgataagagaa |
7722522 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7722521 |
gttttaattttacaaatcgcacacctgagcaacgagttttgagacaaagagaaactcattcttttattcgcgaggaagaagttattggaagagataagga |
7722422 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaat |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7722421 |
gaagaaagagctgatagagttgttgtttaacaccggcaacaat |
7722379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 7714334 - 7714095
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||||| | |||||||| |
|
|
| T |
7714334 |
ttcttctcatcatccaaccaacttctcttttctttcaaaatggttcagaaaattaaggaactaagtaagagaattgaggaccttaatgctaataagagaa |
7714235 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7714234 |
gttttaattttacaaatcgcactcctgagcaacgagttttgaaacaaagagaaactcactcctttattcttgaggaagaagttattggaagagatgagga |
7714135 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaac |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7714134 |
gaagaaagagttgatagagttgttgtttaacaccggcaac |
7714095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 7129347 - 7129105
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
7129347 |
ttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaattgaggcccttaattttgataagagag |
7129248 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
| |||||||||||||||||| | ||| ||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7129247 |
tctttaattttacaaatcgcgcacctgagcaacgagttttgagagaaagagaaactcactcctttattcgtgaggaagaagttattggaagagatgagga |
7129148 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaat |
272 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7129147 |
gaagaaaaagttgatagagttgttgtttaacaccggcaacaat |
7129105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 7494193 - 7494435
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7494193 |
ttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaattgaggcccttaatgttgctaagagag |
7494292 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
| ||||||||||||||||| | ||| ||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7494293 |
tctttaattttacaaatcgtgcacctgagcaacgagttttgagagaaagagaaactcactcctttattcgtgaggaagaagttattggaagagatgagga |
7494392 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaat |
272 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7494393 |
gaagaaaaagttgatagagttgttgtttaacaccggcaacaat |
7494435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 7519860 - 7520102
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7519860 |
ttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagataattaaggaacttagtaagagaattgaggcccttaatgttggtaaaagaa |
7519959 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
7519960 |
gttttaactttacaaatcgcactcctgagcaacgagttttgaaacaacgagaaactcactcctttattcgtgcagaagaagttattggaagagaggagga |
7520059 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaat |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7520060 |
gaagaaagagttgatagagttgttgtttaacactagcaacaat |
7520102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 7527910 - 7528152
Alignment:
| Q |
30 |
ttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7527910 |
ttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaattgaggcccttaatgttgataagagag |
7528009 |
T |
|
| Q |
130 |
tttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgagga |
229 |
Q |
| |
|
| |||||||||||||||||| | ||| ||||||||||||||| | |||||||||||||||| |||||| | | ||||| |||||||||||||||||||| |
|
|
| T |
7528010 |
tctttaattttacaaatcgcgcacctgagcaacgagttttgagagaaagagaaactcactcctttattagtgcagaagatgttattggaagagatgagga |
7528109 |
T |
|
| Q |
230 |
gaagaaagagttgatagagttgttgtttaacaccggcaacaat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7528110 |
aaagaaagagttgatagagttgttgtttaacactagcaacaat |
7528152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 14582429 - 14582370
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14582429 |
cactacaccatttatcctttttaacaacaatcaaaaaatgttgccagaactatgaaaaac |
14582370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 8378365 - 8378313
Alignment:
| Q |
272 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8378365 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
8378313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 9816870 - 9816921
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9816870 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
9816921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 21233312 - 21233252
Alignment:
| Q |
272 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21233312 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
21233252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 22837216 - 22837155
Alignment:
| Q |
271 |
atcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22837216 |
atcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaagaaaaac |
22837155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 34199270 - 34199330
Alignment:
| Q |
272 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34199270 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
34199330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 24953913 - 24953854
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24953913 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
24953854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 19096631 - 19096690
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19096631 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgtcagaactatgaaaaac |
19096690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 25398711 - 25398770
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25398711 |
cactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
25398770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 25403849 - 25403908
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25403849 |
cactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
25403908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 25407838 - 25407897
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25407838 |
cactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
25407897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 20347983 - 20347923
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaat-cgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||| ||||| |||||||||| |
|
|
| T |
20347983 |
cactacacaatttatcctttttaacaaaaataaaaaaaatgttgtcagaattatgaaaaac |
20347923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 8518909 - 8518968
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8518909 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
8518968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 18453016 - 18452965
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18453016 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
18452965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 21841725 - 21841691
Alignment:
| Q |
298 |
aacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21841725 |
aacaatcgaaaaatgttgccagaactaagaaaaac |
21841691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 21842055 - 21842025
Alignment:
| Q |
272 |
tcactacaccatttatcctttttaacaacaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21842055 |
tcactacaccatttatcctttttaacaacaa |
21842025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 18495682 - 18495741
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18495682 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
18495741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 49552299 - 49552240
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
49552299 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccacaactaagaaaaac |
49552240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 42 - 262
Target Start/End: Complemental strand, 16750632 - 16750412
Alignment:
| Q |
42 |
tccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaatttta |
141 |
Q |
| |
|
|||||||| ||||||||||| | || |||| |||||||||||| ||||||| ||| ||||||||| ||||| |||| || || |||||| ||||||| |
|
|
| T |
16750632 |
tccaaccagcttctcttttcgtttaacatggctcagaaaattaagaaacttaggaagcgaattgagggtcttaacgttgataggaaaattttcaatttta |
16750533 |
T |
|
| Q |
142 |
caaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagtt |
241 |
Q |
| |
|
| |||| ||||||| || |||||||| ||| || |||| |||||| || || ||||| |||||| |||| || |||||||| || || ||||| || || |
|
|
| T |
16750532 |
ctaatcacactcctgagaaacgagttatgaggcagagagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgacgaaaagaaggattt |
16750433 |
T |
|
| Q |
242 |
gatagagttgttgtttaacac |
262 |
Q |
| |
|
|||| |||| ||||| ||||| |
|
|
| T |
16750432 |
gataaagttattgttgaacac |
16750412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 3803147 - 3803103
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgcc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3803147 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgcc |
3803103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 18406482 - 18406425
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaa |
330 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
18406482 |
cactacaccatttatcctttataacaataattgaaaaatattgccagaactatgaaaa |
18406425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 4422564 - 4422508
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaa |
330 |
Q |
| |
|
||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4422564 |
cactacaccatttatccttat-aacaacatttgaaaaatgttgccagaactatgaaaa |
4422508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 11694636 - 11694579
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaa |
330 |
Q |
| |
|
||||||| |||||||||||| || ||||| | |||||| |||||| |||||||||||| |
|
|
| T |
11694636 |
cactacagcatttatcctttatagcaacagttgaaaaacgttgcccgaactatgaaaa |
11694579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 20143161 - 20143221
Alignment:
| Q |
272 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20143161 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgtagccagaactatgaaaaac |
20143221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 3538737 - 3538795
Alignment:
| Q |
272 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaa |
330 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
3538737 |
tcactacaccatttatcctttataaaaataatcgaaaaatgttgccagaactatgaaaa |
3538795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 234946 - 235005
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
234946 |
cactacaccatttatcctttttaacaacaatcaaaaaatgttgccagaactatgaaaaac |
235005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 19481651 - 19481702
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19481651 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
19481702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 25474430 - 25474482
Alignment:
| Q |
272 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
324 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25474430 |
tcactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaacta |
25474482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 25605781 - 25605725
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaa |
331 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
25605781 |
cactacaccattt-tcctttt-aacaacaatcgaaaaatgttaccagaacaatgaaaaa |
25605725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 16223 - 16166
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaa |
330 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16223 |
cactacaccatttatcctttataacaacaattgaaaaatgttgccagaactatgaaaa |
16166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 53580 - 53628
Alignment:
| Q |
273 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53580 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaa |
53628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 87804 - 87754
Alignment:
| Q |
280 |
ccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaa |
330 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
87804 |
ccatttatcctttataacaacaattgaaaaatgttgccagaactatgaaaa |
87754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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