View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_low_24 (Length: 308)
Name: NF1373_low_24
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 24 - 279
Target Start/End: Complemental strand, 40546882 - 40546623
Alignment:
| Q |
24 |
ctagtatatcaattatgaagaagagaattctaaagtgagnnnnnnnnnaacagtctaaactgagnnnnnnnnnnnnnnnnaaattaataaaaattgaaat |
123 |
Q |
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| T |
40546882 |
ctagtatatcaattatgaagaagagaattctaaagtgag-ttttttttaacagtctaaactgagtttcttttttctttttaaattaataaaaattgaaat |
40546784 |
T |
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| Q |
124 |
tgaatataaatagtttcttatagagtttatctttcaaatatgtcaagatttaaatgc-----nnnnnnnnnacaactaatacttcttttatcagaatcat |
218 |
Q |
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| T |
40546783 |
tgaatataaatagtttcttatagagtttatctttcaaatatgtcaagatttaaatgcttttttttttttttacaactaatacttcttttatcagaatcat |
40546684 |
T |
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| Q |
219 |
taaataataattagaaacgagttattctaaaaagaaattacaaagagatagatggtattaa |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546683 |
taaataataattagaaacgagttattctaaaaagaaattacaaagagatagatggtattaa |
40546623 |
T |
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