View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_low_25 (Length: 305)
Name: NF1373_low_25
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 43287814 - 43288100
Alignment:
| Q |
15 |
tatacacacttatcaaataaggagaaatgttaaatatgcaataaaagnnnnnnnnnacaaaacat--gcaataaaagttaatttcatttatttatttttg |
112 |
Q |
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| T |
43287814 |
tatacgcacttatcaaataaggagaaatgttaaatatgcaataaaagtttttttttacaaaacatatgcaataaaagttaatttcatttatttatttttg |
43287913 |
T |
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| Q |
113 |
taaagatttatcacatcagatcaacattggatgaagtactgtgctaattaatgatgaacatgagacatcctagtgttgtcaatggattcactgtatggtg |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43287914 |
taaagatttatcacatcaaatcaacattggatgaagtactgtgcaaattaatgatgaacatgagacatcctagtgttgtcaatggattcactgtatggtg |
43288013 |
T |
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| Q |
213 |
caaaatatagggatagccaaagaaaggttaaatatatatttcctactttgatagaagttcctttccttcacaatggcatatgctttt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288014 |
caaaatatagggatagccaaagaaaggttaaatatatatttcctactttgatagaagttcctttccttcacaatggcatatgctttt |
43288100 |
T |
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