View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1373_low_27 (Length: 298)

Name: NF1373_low_27
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1373_low_27
NF1373_low_27
[»] chr7 (5 HSPs)
chr7 (9-89)||(35381717-35381797)
chr7 (116-269)||(35356659-35356812)
chr7 (116-269)||(35381872-35382025)
chr7 (117-269)||(35371883-35372036)
chr7 (9-45)||(35355706-35355742)
[»] chr4 (2 HSPs)
chr4 (14-46)||(19685683-19685715)
chr4 (14-51)||(19628915-19628952)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 35381717 - 35381797
Alignment:
Q  9 agcataggtgataagtctaggacttttaaatcaggtaacttcacatttttggaacccaactcacctaaactttccaacata 89  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35381717 agcaaaggtgataagtctaggacttttaaatcaggtaacttcacatttttggaacccaactcacctaaactttccaacata 35381797  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 35356659 - 35356812
Alignment:
Q  116 gaattcgaagtaaaataatg-tttttgattcggataacctttgatgcatgaagaaacaacaacttagtacacactgtgaactttacattggaaggttccc 214  Q
    |||||||||||| ||| ||| ||||||||| | |||||| | ||||  || ||||||| || || | | |||||||||||||||| ||||||||||| ||    
T  35356659 gaattcgaagtagaatgatgatttttgatttgaataaccat-gatgggtgcagaaacatcagctgaatgcacactgtgaactttatattggaaggttacc 35356757  T
Q  215 acgattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttg 269  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35356758 acaattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttg 35356812  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 35381872 - 35382025
Alignment:
Q  116 gaattcgaagtaaaataatg-tttttgattcggataacctttgatgcatgaagaaacaacaacttagtacacactgtgaactttacattggaaggttccc 214  Q
    |||||||||||| ||| ||| ||||||||| | |||||| | ||||  || ||||||| || || | | |||||||||||||||| ||| ||||||||||    
T  35381872 gaattcgaagtagaatgatgatttttgatttgaataaccat-gatgggtgcagaaacatcagctgaatgcacactgtgaactttatattcgaaggttccc 35381970  T
Q  215 acgattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttg 269  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35381971 acaattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttg 35382025  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 269
Target Start/End: Original strand, 35371883 - 35372036
Alignment:
Q  117 aattcgaagtaaaataatg-tttttgattcggataacctttgatgcatgaagaaacaacaacttagtacacactgtgaactttacattggaaggttccca 215  Q
    ||||||||||| ||||||| ||||| ||| | ||||||||||||| ||| |||| || || |||| |  || |  ||||| ||| ||||||||||| |||    
T  35371883 aattcgaagtagaataatgattttttatttgaataacctttgatggatgcagaatcatcagcttaatgaacgccatgaacattatattggaaggttacca 35371982  T
Q  216 cgattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttg 269  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371983 caattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttg 35372036  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 35355706 - 35355742
Alignment:
Q  9 agcataggtgataagtctaggacttttaaatcaggta 45  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  35355706 agcaaaggtgataagtttaggacttttaaatcaggta 35355742  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 19685683 - 19685715
Alignment:
Q  14 aggtgataagtctaggacttttaaatcaggtaa 46  Q
    |||||||||||||||||||||||||||||||||    
T  19685683 aggtgataagtctaggacttttaaatcaggtaa 19685715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 19628952 - 19628915
Alignment:
Q  14 aggtgataagtctaggacttttaaatcaggtaacttca 51  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  19628952 aggtgataagtctaggacttttaaaccaggtaaattca 19628915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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