View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1373_low_3 (Length: 848)

Name: NF1373_low_3
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1373_low_3
NF1373_low_3
[»] chr5 (13 HSPs)
chr5 (375-836)||(9618754-9619222)
chr5 (75-384)||(9617638-9617944)
chr5 (726-836)||(19969339-19969449)
chr5 (715-828)||(1347721-1347834)
chr5 (715-782)||(19807073-19807140)
chr5 (720-784)||(20112126-20112190)
chr5 (1-52)||(9617645-9617696)
chr5 (457-508)||(13712283-13712334)
chr5 (733-827)||(13711924-13712018)
chr5 (137-207)||(19805768-19805838)
chr5 (716-777)||(17392589-17392650)
chr5 (430-507)||(19806782-19806859)
chr5 (716-761)||(27358161-27358206)
[»] chr3 (6 HSPs)
chr3 (82-203)||(32242700-32242821)
chr3 (75-190)||(32225833-32225949)
chr3 (75-327)||(32225231-32225477)
chr3 (748-798)||(32226768-32226818)
chr3 (457-515)||(24890844-24890902)
chr3 (726-791)||(32241837-32241902)
[»] chr6 (2 HSPs)
chr6 (77-203)||(16259105-16259231)
chr6 (726-798)||(16258249-16258321)
[»] scaffold0009 (3 HSPs)
scaffold0009 (730-788)||(34169-34227)
scaffold0009 (730-788)||(21922-21980)
scaffold0009 (730-788)||(40799-40857)
[»] chr1 (1 HSPs)
chr1 (716-777)||(26052813-26052874)


Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 375 - 836
Target Start/End: Original strand, 9618754 - 9619222
Alignment:
Q  375 cttttattatacatctattttgcttaacaagctattatttgattttgtttgtatttttgcagatggggaaaactcatcccattgaagaaatcaattcata 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9618754 cttttattatacatctattttgcttaacaagctattatttgattttgtttgtatttttgcagttgtggaaaactcatcccattgaagaaatcaattcata 9618853  T
Q  475 ttacattgacattcccgtgtttgaaaacttaaccgtacttcgactatattggatttttcatgtcctttttgactgggatgatgtaatgaaaatgctccaa 574  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9618854 ttacattgacattcccgtgtttgaaaacttaacagtacttcgactatattggatttttcatgtcctttttgactgggatgatgtaatgaaaatgctccaa 9618953  T
Q  575 agttgtcccaaacttcaagattttaccatttcaaaggtaattgtttgtcacgtccgtagatagtgttaatggtttttatttattctct-------cgttt 667  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||    
T  9618954 agttgtcccaaacctcaagattttaccatttcgaaggtaattgtttgtcacgtccgtagatagtgttaatggcttttatttattctctctttaaccgttt 9619053  T
Q  668 taacaaatcctattttatttttgattgacagtggacaagcgattcagaaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatct 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619054 taacaaatcctattttatttttgattgacagtggacaagcgattcagaaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatct 9619153  T
Q  768 catttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttgcaaggtatatt 836  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9619154 catttaacaacatgtaacattttacactatctagatgtggaacctgattttcgatttgcaaggtatatt 9619222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 75 - 384
Target Start/End: Original strand, 9617638 - 9617944
Alignment:
Q  75 tcattgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatgggtgtccc 174  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||    
T  9617638 tcattgttctgttcatcttcctttacttaagaccctggatatgatgaatgtccgtttcgatgatatggaggatttaaataaacttatctatgggtgtccc 9617737  T
Q  175 atattagagaatttgacaatttcatatgttaaagcagcaagtgccggaaacattacagctggaggagggtactctaaacccctaccgaagttgatcaaag 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9617738 atattagagaatttgacaatttcatatgttaaagcagaaagtgccggaagcattatagctggaggagggtactctaaacccctaccgaagttgatcaaag 9617837  T
Q  275 ctagtattcatttattcgaggtaattccactcagagcagtttctaatgtgcaacatctaagtgtactcgaggtaataagatatatcatatgatgcatgct 374  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9617838 ctagtattcatttattcgagg---ttccactcagagcagtttctaatgtgcaacatctaagtgtactcgaggtaataagatatatcatattatgcatgct 9617934  T
Q  375 cttttattat 384  Q
    ||||||||||    
T  9617935 cttttattat 9617944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 726 - 836
Target Start/End: Complemental strand, 19969449 - 19969339
Alignment:
Q  726 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttg 825  Q
    ||||||||||||||| |||||||||| ||||||||||  |||||| | |||||||||||||||  |||||||| || ||||||| |||||||||||||||    
T  19969449 gattggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattttcgatttg 19969350  T
Q  826 caaggtatatt 836  Q
    ||| |||||||    
T  19969349 caacgtatatt 19969339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 715 - 828
Target Start/End: Complemental strand, 1347834 - 1347721
Alignment:
Q  715 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctga 814  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||||||||| |||||| | ||||||||||||||  ||||||||| || ||||||| ||||    
T  1347834 aaaccaaagcggattggatatacccatatcatgttcctcaatgtgtttcctctcatcttacaacatgtaatatcatacactatcaagctgtggaagctga 1347735  T
Q  815 ttttcgatttgcaa 828  Q
    ||| ||||||||||    
T  1347734 tttccgatttgcaa 1347721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 715 - 782
Target Start/End: Original strand, 19807073 - 19807140
Alignment:
Q  715 aaaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgt 782  Q
    |||||| | ||||||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||    
T  19807073 aaaccacaaaggattggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgt 19807140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 720 - 784
Target Start/End: Original strand, 20112126 - 20112190
Alignment:
Q  720 aaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaa 784  Q
    |||||| |||||||||||||| || ||||||||||||||||||  |||| | | |||||||||||    
T  20112126 aaagagaattggaaatacccatatgatgttcctgaatgtgttttgtctcgtctcacaacatgtaa 20112190  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9617696 - 9617645
Alignment:
Q  1 cgaaacgaacatccatcagatccggggtcttaagtaaaggaagatgaccaga 52  Q
    ||||||| |||| ||||| |||| ||||||||||||||||||||||| ||||    
T  9617696 cgaaacggacattcatcatatccagggtcttaagtaaaggaagatgaacaga 9617645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 508
Target Start/End: Complemental strand, 13712334 - 13712283
Alignment:
Q  457 tgaagaaatcaattcatattacattgacattcccgtgtttgaaaacttaacc 508  Q
    |||||||||||||||||||||||  | | |||| ||||||||||||||||||    
T  13712334 tgaagaaatcaattcatattacaaaggctttcctgtgtttgaaaacttaacc 13712283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 733 - 827
Target Start/End: Complemental strand, 13712018 - 13711924
Alignment:
Q  733 aatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatctagatgtggaacctgattttcgatttgca 827  Q
    |||||||  ||||||||||| || ||||||| |||||||||||||| |||   ||| || |||||  || ||||||| ||||||| |||||||||    
T  13712018 aataccctgatcatgttcctaaaggtgtttcctctcatttaacaacttgtcgaattataaactatgaagttgtggaagctgatttccgatttgca 13711924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 19805768 - 19805838
Alignment:
Q  137 atatggaggatttcaagaaacttatctatgggtgtcccatattagagaatttgacaatttcatatgttaaa 207  Q
    |||| |||||||||| ||||||| | | ||||||||||||||| |||||||||| || |  ||||||||||    
T  19805768 atatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaa 19805838  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 777
Target Start/End: Original strand, 17392589 - 17392650
Alignment:
Q  716 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaa 777  Q
    ||||| |||| ||||| |||| ||| |||||||||| ||||||||||| |||||| ||||||    
T  17392589 aaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaa 17392650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 507
Target Start/End: Original strand, 19806782 - 19806859
Alignment:
Q  430 tttgcagatggggaaaactcatcccattgaagaaatcaattcatattacattgacattcccgtgtttgaaaacttaac 507  Q
    ||||||||||| || || || | ||| |||||||||||||| ||||||||  | | || |||||||||||||||||||    
T  19806782 tttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggcttttccgtgtttgaaaacttaac 19806859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 761
Target Start/End: Complemental strand, 27358206 - 27358161
Alignment:
Q  716 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtt 761  Q
    ||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  27358206 aaccaaagatgataggaaatacccagatcatgttcctgagtgtgtt 27358161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 32242821 - 32242700
Alignment:
Q  82 tctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatgggtgtcccatattag 181  Q
    |||||||||||||||| |||||| || ||  || |||| ||||||| ||| ||||||||||| ||||| ||||||||||| | |||||||||||| ||||    
T  32242821 tctgttcatcttccttcacttaaaacactacatatgattgatgttcatttggatgatatggaagatttaaagaaacttatatctgggtgtcccatgttag 32242722  T
Q  182 agaatttgacaatttcatatgt 203  Q
    || |||||| |||| |||||||    
T  32242721 aggatttgaaaattgcatatgt 32242700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 32225833 - 32225949
Alignment:
Q  75 tcattgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcg-atgatatggaggatttcaagaaacttatctatgggtgtcc 173  Q
    |||||| ||||||||||||||||||||||| ||  |  ||||||| | ||||||||| | || |||| |||||||| ||||||||||| | |||||||||    
T  32225833 tcattgttctgttcatcttcctttacttaaaacgttacatctgattgttgttcgttttggattatatcgaggatttaaagaaacttatatctgggtgtcc 32225932  T
Q  174 catattagagaatttga 190  Q
    |||||||||| ||||||    
T  32225933 catattagaggatttga 32225949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 327
Target Start/End: Complemental strand, 32225477 - 32225231
Alignment:
Q  75 tcattgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatgggtgtccc 174  Q
    |||||| ||| ||||||||||||||||||| |   |  ||||||| || |||| ||| |||||||| |||||||| ||||||||||| | || || ||||    
T  32225477 tcattgttcttttcatcttcctttacttaaaaagttacatctgattgacgttcatttggatgatatcgaggatttaaagaaacttatatctgagtttccc 32225378  T
Q  175 atattagagaatttgacaatttcatatgttaaagcagcaagtgccggaaaca---ttacagctggaggagggtactctaaacccctaccgaagttgatca 271  Q
    ||||||||| |||||| ||  |||||||| |   || |||||| |||   |    |||||||||||||   ||||||||||||| || | |||||||| |    
T  32225377 atattagaggatttgaaaacatcatatgtca---catcaagtgtcggggtcgagtttacagctggagg---gtactctaaacccttatccaagttgatta 32225284  T
Q  272 aagctagtattcatttattcgaggtaattccactcagagcagtttctaatgtgcaa 327  Q
    |||||| ||| | ||||||||| |   |||| ||||||| ||||||||||||||||    
T  32225283 aagctaatatccgtttattcgatg---ttccgctcagagtagtttctaatgtgcaa 32225231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 748 - 798
Target Start/End: Original strand, 32226768 - 32226818
Alignment:
Q  748 ttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 798  Q
    ||||||||||||||||||| |||||||||||||| || |||||| ||||||    
T  32226768 ttcctgaatgtgtttcatcccatttaacaacatgcaaaattttagactatc 32226818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 24890844 - 24890902
Alignment:
Q  457 tgaagaaatcaattcatattacattgacattcccgtgtttgaaaacttaaccgtacttc 515  Q
    |||||||||||||||||||||||  |   |||| ||||||||||||||||||| |||||    
T  24890844 tgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaaccgaacttc 24890902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 791
Target Start/End: Complemental strand, 32241902 - 32241837
Alignment:
Q  726 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatttta 791  Q
    ||||||||| ||||| ||   |||||||| ||||||||||| |||||||||||||| || ||||||    
T  32241902 gattggaaacacccatatacggttcctgattgtgtttcatcccatttaacaacatgcaaaatttta 32241837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 16259231 - 16259105
Alignment:
Q  77 attgctctgttcatcttcctttacttaagaccctggatctgatggatgttcgtttcgatgatatggaggatttcaagaaacttatctatgggtgtcccat 176  Q
    |||| ||||||||||||||||||||||| || ||  ||||||  ||||||||||| |||||||| |||||||| ||||||||||| |  ||| |||||||    
T  16259231 attgttctgttcatcttcctttacttaaaacgcttcatctgagcgatgttcgttttgatgatatcgaggatttaaagaaacttatatccgggagtcccat 16259132  T
Q  177 attagagaatttgacaatttcatatgt 203  Q
     |||||| |||||| || | |||||||    
T  16259131 gttagaggatttgaaaactgcatatgt 16259105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 726 - 798
Target Start/End: Complemental strand, 16258321 - 16258249
Alignment:
Q  726 gattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatattttacactatc 798  Q
    ||||||||||||||| ||   |||||||| ||||||||||| |||||||||||||| || |||||| ||||||    
T  16258321 gattggaaatacccatatacggttcctgagtgtgtttcatcccatttaacaacatgcaaaattttagactatc 16258249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 730 - 788
Target Start/End: Original strand, 34169 - 34227
Alignment:
Q  730 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 788  Q
    ||||||||| | ||||| ||||||||||||||||||||||| | ||||| |||||||||    
T  34169 ggaaataccgaaatcatattcctgaatgtgtttcatctcatcttacaacgtgtaatatt 34227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 730 - 788
Target Start/End: Original strand, 21922 - 21980
Alignment:
Q  730 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 788  Q
    ||||||||| | ||||| |||||||||||||||| |||||| | |||||||| ||||||    
T  21922 ggaaataccaagatcatattcctgaatgtgtttcgtctcatcttacaacatgcaatatt 21980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 730 - 788
Target Start/End: Original strand, 40799 - 40857
Alignment:
Q  730 ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaatatt 788  Q
    ||||||||| | |||||||||||||||||||||| |||||| | ||||||  |||||||    
T  40799 ggaaataccaagatcatgttcctgaatgtgtttcgtctcatcttacaacaattaatatt 40857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 716 - 777
Target Start/End: Complemental strand, 26052874 - 26052813
Alignment:
Q  716 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaa 777  Q
    ||||| |||| ||||| |||| ||| |||||||||| |||||||||||||||||| ||||||    
T  26052874 aaccatagagcattgggaatatccagatcatgttccagaatgtgtttcatctcatctaacaa 26052813  T

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