View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_low_36 (Length: 201)
Name: NF1373_low_36
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_36 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 10984019 - 10984192
Alignment:
| Q |
28 |
ggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgt |
127 |
Q |
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| T |
10984019 |
ggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgt |
10984118 |
T |
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| Q |
128 |
tctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcagaaaatcttc |
201 |
Q |
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| T |
10984119 |
tctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcagaaaatcttc |
10984192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 11004627 - 11004454
Alignment:
| Q |
28 |
ggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgt |
127 |
Q |
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| T |
11004627 |
ggctttgtccaataatttgaccgctacaagacgatcacttcgaagttttcctttaaaaacagttccataacctccgttgcctagttttatcttgaattgt |
11004528 |
T |
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| Q |
128 |
tctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcagaaaatcttc |
201 |
Q |
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| T |
11004527 |
tctgttatcttttttatgtctttgtaagagtaccttataggcatgatgctattatcactgcgtagaaaatcttc |
11004454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 11011395 - 11011568
Alignment:
| Q |
28 |
ggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgt |
127 |
Q |
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| T |
11011395 |
ggctttgtccaataatttgactgctacaagacgaccacttcgaagttgtcctttgaaaacagatccataccctccattgcctagttttgtcttgaattgt |
11011494 |
T |
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| Q |
128 |
tctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcagaaaatcttc |
201 |
Q |
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| T |
11011495 |
tcggttatcttttttatatctctgtaagagtaccttatagggatgatgctattgtcactactaagaaaatcttc |
11011568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 10915094 - 10915252
Alignment:
| Q |
28 |
ggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgt |
127 |
Q |
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| T |
10915094 |
ggctttgtccaataatttaactgctacaagacgaccactttgaagttgtcctttgaaaacagatccataacctccattgcctaattttgttttgaactgg |
10915193 |
T |
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| Q |
128 |
tctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcact |
186 |
Q |
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| T |
10915194 |
tgtgttatcttttttatgtctttgtaagagtaccttataggcatgatgttattgtcact |
10915252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 11033693 - 11033859
Alignment:
| Q |
35 |
tccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgtta |
134 |
Q |
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| T |
11033693 |
tccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaacggatccataacctccattgcctagttttgtcttgaattgttcagtta |
11033792 |
T |
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| Q |
135 |
tcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcagaaaatcttc |
201 |
Q |
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| T |
11033793 |
tcctttttatgtctttgtaagaatacctaataggcatgatgctattgtcactacgtagaaaatcttc |
11033859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 11008238 - 11008406
Alignment:
| Q |
33 |
tgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgt |
132 |
Q |
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| T |
11008238 |
tgtccaataatttgactgctacaagacgaccacttcgaagttgtcctttgaaaacagatccataacctccattgcctagttttgtcatgaaatttccggt |
11008337 |
T |
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| Q |
133 |
tatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcagaaaatcttc |
201 |
Q |
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| T |
11008338 |
tatcttttttatctctttgtaagagtaccttatagggatgatgctattatcactacttagaaaatcttc |
11008406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 10903931 - 10904104
Alignment:
| Q |
28 |
ggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgttttgaattgt |
127 |
Q |
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|||||||||||||||||| || ||| |||||| ||| ||||| ||||||||||| | |||| ||||| |||||||| ||||||||||| |||||||| |
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| T |
10903931 |
ggctttgtccaataatttcaccgctgcaagacgaccacttcgaagttgtcctttgtagacagagccatagcctccattccctaattttgtcttgaattgc |
10904030 |
T |
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| Q |
128 |
tctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcagaaaatcttc |
201 |
Q |
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| T |
10904031 |
tcagttatttttttgatgtctttgtatgagtatcttataggcatgatgtcattgttactgtgcagaaaatcttc |
10904104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 11028216 - 11028129
Alignment:
| Q |
31 |
tttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgtt |
118 |
Q |
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| T |
11028216 |
tttgtccaataattttactgctacaagtcagccatttcgaagttgtcctttgaaaacagacccataacctccacttcctagttttgtt |
11028129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 11028132 - 11028077
Alignment:
| Q |
130 |
tgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcac |
185 |
Q |
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| T |
11028132 |
tgttatcttatttatgtctttgaagaagtaccttattggcatgatgctattgtcac |
11028077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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