View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1373_low_5 (Length: 595)
Name: NF1373_low_5
Description: NF1373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1373_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 45107987 - 45108270
Alignment:
| Q |
13 |
aatattggcactgctggtcctaaaattagcccagcctacacacaaataataac-ca---cacaa--aattgattacaattaccttaattcatccgaattc |
106 |
Q |
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| T |
45107987 |
aatattggcactgctggtcctaaaattagcccagcctacacaaaaataacaacacaatgcacaatcaattgattacaattaccttaattcatccgaattc |
45108086 |
T |
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| Q |
107 |
aatttaaagaccttatttcatgaatggaacattcacggtgtatagcattgtcgatataattataaacgagggtttagaaacatgcatcttgttatacatg |
206 |
Q |
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| T |
45108087 |
aatttaaagaccttatttcatgaatggaacattcatggtgtatagcattgtcgatataattataaatgagggtttagaaacatgcatcttgttatacatg |
45108186 |
T |
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| Q |
207 |
gaactgaagcatgttttgctctatgctatgctaattttcctatcctactatcttgcaacaaggaaatacttgtattacaagtta |
290 |
Q |
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| T |
45108187 |
gaactgaagcatgttttgctctatgctatgctaattttcctatcctactatcttgcaacaaggaaatacttgtattacaagtta |
45108270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 350 - 593
Target Start/End: Original strand, 45108337 - 45108580
Alignment:
| Q |
350 |
atatatagttaccatcatttgtgaaatgagcttgggtaaacccaacttcttgataggaaaattgatagcccttgttgtgacataaattagaatgacttga |
449 |
Q |
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| T |
45108337 |
atatatagttaccatcatttgtgaaatgagcttgggtaaacccaactgcttgataggaaaattgatagcccttgttgtgacataaattagaatgacttga |
45108436 |
T |
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| Q |
450 |
tgaagaaatactgggaaagaggacctgaatggactcccttcggtctcatgttttccccatatgccatgggagagaatattaggcggggtggaaatgcaaa |
549 |
Q |
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| T |
45108437 |
tgaagaaatactgggaaagaggacctgaatggactcccttcggactcatgttttccccatatgccatgggagagaatattaggcggggtggaaatgcaaa |
45108536 |
T |
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| Q |
550 |
cattatagttcagaagattagaattaataatattattggacatg |
593 |
Q |
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| T |
45108537 |
cattatagtttagaagattagaattaacaacattgttggacatg |
45108580 |
T |
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