View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1374-INSERTION-3 (Length: 741)

Name: NF1374-INSERTION-3
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1374-INSERTION-3
NF1374-INSERTION-3
[»] chr3 (1 HSPs)
chr3 (6-741)||(2971549-2972293)


Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 6 - 741
Target Start/End: Complemental strand, 2972293 - 2971549
Alignment:
Q  6 caaattatccattgactaactaaagactaattgttggtgacaaatattgtactcttttacctgcagacagatacacagaaacatgacgaaattcatggac 105  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  2972293 caaattatccattgactaactaaagactaattgttggtgacataaattgtactcttttaactgcagacagatccacagaaacatgacgaaattcatggac 2972194  T
Q  106 aggatcccttgtggtatgtacaggataacgagcgacaactccattgaaaagttgaaagatccaaaatcattagctgtcaaactttctgaaaggcacgaaa 205  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2972193 aggatcccttgtggtatgtataggataacgagtgacaactcaattgaaaagttgaaagatccaaaatcattagctgccaaactttctgaaaggcacgaaa 2972094  T
Q  206 atataagctattcggaaatgatacccggaagtgaagatgatggattttcttttcaaagtaagtatttgttatgc-------ggaaagaatnnnnnnnncc 298  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||        ||    
T  2972093 atataagctattcggaaatgataccaggaaatgaagatgatggattttcttttcaaagtaagtatttgttatgcagatattggaaagaataaaaaaaacc 2971994  T
Q  299 ttatagcaatatctgcatatttggaaaagtgaaaacatatatacttcattttgtgaaaatgtatgctatgaatccaagatatcatgatgtttcattatac 398  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  2971993 ttatagcaatatctgcatatttggaaaagtgaaaa--tatatacttcattttgtgaaaatgtatgctatgaatcaaagatatcatgatgtttcattatat 2971896  T
Q  399 acctatgttgaggaaaatccgcacacactaaggatcttacataaaaacacacaaacacatgaagaaagcaatagaataaacacaaa--tttatgtggctt 496  Q
    ||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||| ||   ||||||||||||||||||||||  |||| ||||||     
T  2971895 acctatgttgaggaaaatctgcacacactaaggatcttatatcgaaacacacaaacacgtgcgcaaagcaatagaataaacacaaaaatttacgtggctc 2971796  T
Q  497 --ggcacctattgctcacgtgcgcaaaatcttctcaacaattatgtttgttatcttaaatctatctttgcatttggatgattaagtactaaaactaatga 594  Q
      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  2971795 tcggcacctattgctcacatgcgcaaaatcttctcaacaattatgtttgttatcttaaacctatctttgcatttggatgattaagtactataactgatga 2971696  T
Q  595 tgctaatgattcatcaagcagtgtccaagtcttcttcatctaccgatctattcacatccggagtttcaagtcagtgcagtactgatgcagctacttctgg 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2971695 tgctaatgattcatcaagcagtgtccaagtcttcttcatctaccgatctattcacatccggagtttcaagtcagtgcagtactgatgcagctacttctgg 2971596  T
Q  695 ccttggaagttcacagtatgtccttcaaaaatgccaagtgggggatt 741  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2971595 tcttggaagttcacagtatgtccttcaaaaatgccacgtgggggatt 2971549  T

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